Prevalence of Severe Acute Respiratory Syndrome related Coronavirus (SARSr)

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Philip Tzou edited this page Nov 23, 2021 · 2 revisions

The prevalence data of Severe Acute Respiratory Syndrome-related Coronavirus (SARSr) is calculated using following sequences:

Accession	Host	Isolate Name
NC_045512	Human	SARS-CoV-2 Wuhan-Hu-1
NC_004718	Human	SARS-CoV Tor2
KY352407	Bat	BtKY72
KJ473812	Bat	BtRf-BetaCoV/HeB2013
KJ473811	Bat	BtRf-BetaCoV/JL2012
MK211374	Bat	BtRl-BetaCoV/SC2018
KJ473816	Bat	BtRs-BetaCoV/YN2013
DQ022305	Bat	HKU3-1
KF569996	Bat	LYRa11
MT040335	Pangolin	PCoV_GX-P5L
MN996532	Bat	RaTG13
KY417145	Bat	Rf4092
DQ412043	Bat	Rm1
JX993987	Bat	Rp/Shaanxi2011
DQ071615	Bat	Rp3
KY417147	Bat	Rs4237
KY417148	Bat	Rs4247
KY417150	Bat	Rs4874
KC881005	Bat	RsSHC014
KP886808	Bat	YNLF_31C
MG772933	Bat	bat-SL-CoVZC45
EPI_ISL_412976	Bat	RmYN01
EPI_ISL_412977	Bat	RmYN02
MT799521	Pangolin	cDNA8-S

The prevalence data is created using script from https://github.com/hivdb/chiro-alignment/blob/master/bash_scripts/stat_prevalence.sh. TODO: write description of this script.

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