2025_01

Changes:

• added tools: QcToTsv, TsvDiff
• removed tools: PERsim, SampleDiff, VcfMerge
• NGSD:
  • device: added type Revio
  • variant_classification/report_configuration_cnv/report_configuration_sv: renamed class R* to R
• BamToFastq: added flags -extend and - fix
• NGSDAnnotateSV: now only annotates overlapping pathogenic SVs in NGSD
• TsvSlice: add flag -rm
• VcfAdd: now contains all functionality of the removed tool VcfMerge
• VcfBreakMulti: Added correct handling of phased GT

Full Changelog at: 2024_11...2025_01

Note: Please do not use the auto-generated 'Source code' packages - they will not work!