Sync dev to master, preparing for release 0.12.0-alpha.0 #354
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…rlap if a cluster overlaps another by >=80%, then we detect conflict and has to filter one out
different clusters
…sus_path_to_fastaq()
Improved mapping
feat: adds parameter --min-gene-coverage-proportion to pandora map, compare and discover
… command subcommands
feat: adds flag --no-gene-coverage-filtering to pandora map, compare and discover
…cover and command subcommands
…_cluster feat: adding param --partial-matching-lower-bound to pandora map, discover and command subcommands
leoisl
changed the title
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This PR syncs dev to master, preparing for release 0.12.0-alpha.0.
It applies to master the following PRs: #344 #351 #352 #353