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Sync dev to master, preparing for release 0.12.0-alpha.0 #354

Merged
merged 27 commits into from
Dec 14, 2023
Merged

Sync dev to master, preparing for release 0.12.0-alpha.0 #354

merged 27 commits into from
Dec 14, 2023

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leoisl
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@leoisl leoisl commented Dec 14, 2023

This PR syncs dev to master, preparing for release 0.12.0-alpha.0.

It applies to master the following PRs: #344 #351 #352 #353

…rlap

if a cluster overlaps another by >=80%, then we detect conflict and has to filter one out
feat: adds parameter --min-gene-coverage-proportion to pandora map, compare and discover
feat: adds flag --no-gene-coverage-filtering to pandora map, compare and discover
…_cluster

feat: adding param --partial-matching-lower-bound to pandora map, discover and command subcommands
@leoisl leoisl merged commit 3f66c92 into master Dec 14, 2023
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@leoisl leoisl changed the title Sync dev to master, preparing for release 0.9.3 Sync dev to master, preparing for release 0.12.0-alpha.0 Dec 14, 2023
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