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Run pytest unit tests on circleci #50

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Jul 23, 2022
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14 changes: 11 additions & 3 deletions .circleci/config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,13 +11,21 @@ jobs:
command: |
conda install -y --file .circleci/specfile.txt
- run:
name: "Build s1-reader python package"
name: "Build s1reader python package"
command: |
python3 -m build --sdist --wheel .
#- run:
# name: "Download S1 test data"
# command: |
# python3 tests/download_data.py
- run:
name: "Download S1 test data"
name: "Install s1reader python package"
command: |
python3 tests/download_data.py
python3 -m pip install .
- run:
name: "Run unit tests"
command: |
python3 -m pytest

workflows:
build-workflow:
Expand Down
2 changes: 1 addition & 1 deletion .circleci/freeze-deps.sh
Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
#!/bin/sh
docker run -v "$PWD:/mnt" -w /mnt --rm -it continuumio/miniconda3 bash -c 'conda install -y -c conda-forge isce3=0.6 build setuptools && conda list --explicit > specfile.txt'
docker run -v "$PWD:/mnt" -w /mnt --rm -it continuumio/miniconda3 bash -c 'conda install -y -c conda-forge isce3=0.6 build setuptools pytest isce3 shapely backoff && conda list --explicit > specfile.txt'
122 changes: 64 additions & 58 deletions .circleci/specfile.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.5.18.1-ha878542_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.6.15-ha878542_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2
Expand All @@ -12,39 +12,37 @@ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.1.0-hdcd56e2_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.1.0-ha89aaad_16.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.11-hd8ed1ab_0.tar.bz2
https://repo.anaconda.com/pkgs/main/noarch/tzdata-2021e-hda174b7_0.conda
https://repo.anaconda.com/pkgs/main/noarch/tzdata-2022a-hda174b7_0.conda
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.1.0-h69a702a_16.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libgomp-11.2.0-h1234567_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/_openmp_mutex-4.5-1_gnu.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-11.2.0-h1234567_0.conda
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.1.0-h8d9b700_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/expat-2.4.8-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/fftw-3.3.10-nompi_h77c792f_102.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/freexl-1.0.6-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/geos-3.10.2-h9c3ff4c_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/geos-3.10.3-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.1-h36c2ea0_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/icu-69.1-h9c3ff4c_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/jbig-2.1-h7f98852_2003.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/jpeg-9e-h166bdaf_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/jpeg-9e-h166bdaf_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/json-c-0.16-hc379101_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/lerc-3.0-h9c3ff4c_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.10-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.12-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.16-h516909a_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.20-pthreads_h78a6416_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.32.1-h7f98852_1000.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.2.2-h7f98852_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.11-h166bdaf_1014.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.12-h166bdaf_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.3-h9c3ff4c_1.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/ncurses-6.3-h7f8727e_2.conda
https://conda.anaconda.org/conda-forge/linux-64/nspr-4.32-h9c3ff4c_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.0.3-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.0.4-h166bdaf_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pcre-8.45-h9c3ff4c_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pixman-0.40.0-h36c2ea0_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2
Expand All @@ -59,96 +57,104 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h7f98852_10
https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/xz-5.2.5-h7b6447c_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/yaml-0.2.5-h7b6447c_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.2.12-h7f8727e_1.conda
https://conda.anaconda.org/conda-forge/linux-64/gettext-0.19.8.1-h73d1719_1008.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-14_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h10796ff_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-15_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-hf69c175_9.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.47.0-he49606f_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.37-h21135ba_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-h40fdbc5_10.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.10.0-ha35d2d1_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.13-h7f98852_1004.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.9.14-h22db469_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libzip-1.9.2-hc929e4a_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-14.0.4-he0ac6c6_0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/readline-8.1.2-h7f8727e_1.conda
https://conda.anaconda.org/conda-forge/linux-64/xerces-c-3.2.3-h8ce2273_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.12-h27826a3_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xerces-c-3.2.3-h55805fa_5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xorg-libsm-1.2.3-hd9c2040_1000.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.11-h166bdaf_1014.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.2-h8a70e8d_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.2-h8a70e8d_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.1-h83bc5f7_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/boost-cpp-1.74.0-h6cacc03_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h10796ff_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/boost-cpp-1.74.0-h75c5d50_8.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/freetype-2.10.4-h0708190_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.19.3-h08a2579_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-14_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-15_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libglib-2.70.2-h174f98d_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-14_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.47.0-he49606f_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.37-h21135ba_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.10.0-ha35d2d1_2.tar.bz2
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https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.9.12-h885dcf4_1.tar.bz2
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https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.4.0-hc85c160_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.39.0-h4ff8645_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xorg-libx11-1.7.2-h7f98852_0.tar.bz2
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