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Add link to stable release of manual-correction. Update manual_correc…
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…tion.py example command.
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valosekj committed Mar 2, 2023
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5 changes: 3 additions & 2 deletions README.md
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Expand Up @@ -94,11 +94,12 @@ Lesions are segmented on the PSIR or STIR contrasts (when available). The workfl
- User create/adjust the segmentation mask using editing tools. Toggle the lesion overlay on/off to help validate the accuracy of the label ('Command F' on a Mac),
- Save the mask

We created a script to do this, which you can download [here](https://github.com/spinalcordtoolbox/manual-correction).
We created a script to do this, which you can download [here](https://github.com/spinalcordtoolbox/manual-correction/tree/r20230302).

Then, run:

```bash
python manual_correction.py -path-in <INPUT_PATH> -config <CONFIG_FILE> -path-out <OUTPUT_PATH> -viewer fsleyes
python manual_correction.py -path-in <INPUT_PATH> -config <CONFIG_FILE> -path-out <OUTPUT_PATH>
```

- `INPUT_PATH`: BIDS dataset from which manual lesions will be identified
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