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Adjust step for r-dependencies installation #19

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merged 4 commits into from
Jan 11, 2023
Merged

Adjust step for r-dependencies installation #19

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d6402bf
Adjust step for r-dependencies installation
shun2wang Dec 22, 2022
0a0ca96
Cleaning igraph
shun2wang Dec 22, 2022
bf726cc
Give `igraph` back
shun2wang Dec 22, 2022
2f536c3
Resolve dependencies intall break on macOS
shun2wang Dec 23, 2022
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26 changes: 11 additions & 15 deletions .github/workflows/unittests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -125,8 +125,19 @@ jobs:
sudo apt install libharfbuzz-dev libfribidi-dev libgit2-dev libcurl4-openssl-dev
shell: bash

- name: Set environment variable to never compile packages on Windows and macOS
if: runner.os != 'Linux' && matrix.r != 'devel'
run: |
# don't try to install new pkgs versions from source (which often requires additional system dependencies which, when missing, lead to errors, e.g., ragg).
cat("\noptions(install.packages.compile.from.source = \"never\")\n", file = "~/.Rprofile", sep = "", append = TRUE)
shell: Rscript {0}

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: |
any::rcmdcheck
github::jasp-stats/jaspTools
cran::igraph
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needs: check
cache-version: 2

Expand All @@ -135,26 +146,11 @@ jobs:
run: sudo apt install jags
shell: bash

- name: Set environment variable to never compile packages on Windows and macOS
if: runner.os != 'Linux' && matrix.r != 'devel'
run: |
# don't try to install new pkgs versions from source (which often requires additional system dependencies which, when missing, lead to errors, e.g., ragg).
cat("\noptions(install.packages.compile.from.source = \"never\")\n", file = "~/.Rprofile", sep = "", append = TRUE)
shell: Rscript {0}

- name: Setup jaspTools
run: |
install.packages(c("remotes", "ragg"))
remotes::install_github("jasp-stats/jaspTools")
jaspTools::setupJaspTools()
shell: Rscript {0}

# so Rstudio's binary for igraph appears to be incompatible (i.e., crashes hard) with GitHub actions. Instead, we install igraph from source
- name: Make sure igraph is installed from source
if: runner.os == 'Linux' && inputs.needs_igraph
run: install.packages("igraph", type = "source", repos = "https://cloud.r-project.org/")
shell: Rscript {0}

- name: Run unit tests
run: source("tests/testthat.R")
shell: Rscript {0}