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Jianlin Shi edited this page Sep 17, 2023 · 33 revisions

EasyCIE(GUI) is a rule-based clinical information extraction tool designed for non-NLP(natural language processing) expert users. It a GUI wrapper on top of EasyCIE, an UIMA-based command line version that allows executing on servers.

Downloads

The most recent compiled releases can be found at: https://github.com/jianlins/EasyCIE_GUI/releases/download/v3.0.4/EasyCIE_3.0.4_SNAPSHOT_wo_jdk.zip

For archived versions, check this GDrive folder.

Although this GUI component is designed to be easily extensible for adapting different databases and wrapping other pipelines without hard coding, this wiki is mainly written as a user guide for EasyCIE(GUI).

EasyCIE(GUI) functionalities

EasyCIE NLP components

EasyCIE is under active development. The components are expanding rapidly. In the current released version, the built-in NLP pipeline includes the following components:

Configure your pipeline

All the components below are configurable through an excel file:

Suggestions & Comments

If you have any issues, suggestions or comments regarding using EasyCIE, feel free to leave a messages in issues.

Acknowledgement

Special thanks to Danielle Mowery for helping the EasyCIE tutorial at ICHI2017. The tutorial material can be accessed from here.

All the demonstration examples are pulled from MIMIC II demo dataset. Thanks to PhysioNet for making this de-identified dataset publically available for free.