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add option to custumize reference files (preexisting vs downloadable) #3

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sroener opened this issue Feb 7, 2022 · 0 comments
Closed
2 tasks done

add option to custumize reference files (preexisting vs downloadable) #3

sroener opened this issue Feb 7, 2022 · 0 comments
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sroener commented Feb 7, 2022 •
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Add the option to specify existing reference files (e.g. hg38).

  • Check if filepath is specified. If not, download data.
  • If filepath is specified, check if file exists and has the right right. If not return relevant error.
@sroener sroener self-assigned this Feb 7, 2022
sroener added a commit that referenced this issue Feb 16, 2022
@sroener
feat: add automatic reference genome download and indexing for bwa; r…
528439d 
…esolves #1, resolves #3
@sroener sroener closed this as completed Feb 16, 2022
sroener added a commit that referenced this issue Feb 24, 2022
@sroener
Merge pull request #18 from kircherlab/develop
f7117fc 
feat: add automatic reference genome download and indexing for bwa; resolves #1, resolves #3
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