feat: add automatic reference genome download and indexing for bwa; resolves #1, resolves #3 #18
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Changes
additions
added config/multiqc_config.yaml
whitelisted config/multiqc_config.yaml in .gitignore
added new rule for downloading reference genomes from UCSC
added rule for indexing downloaded reference genomes for bwa
refactor
moved pre_alignment QC to separate rule
updates