Merge pull request #497 from latchbio/taras/perm-issue

fix: run nextflow tasks as the root user to allow full access to OFS mount point files
latchbio · Oct 8, 2024 · 2e7b827 · 2e7b827
2 parents 3f60520 + c6874b9
commit 2e7b827
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,13 @@ Types of changes
 
 # Latch SDK Changelog
 
+## 2.53.5 - 2024-10-08
+
+### Added
+
+* Nextflow
+  - Run nextflow task pods as root to allow full access to all files in the shared filesystem
+
 ## 2.53.4 - 2024-10-07
 
 ### Added

diff --git a/latch_cli/nextflow/workflow.py b/latch_cli/nextflow/workflow.py
@@ -242,6 +242,10 @@ def generate_nextflow_config(pkg_root: Path):
             executor = 'k8s'
         }
 
+        k8s {
+            runAsUser = 0
+        }
+
         aws {
             client {
                 anonymous = true

diff --git a/setup.py b/setup.py
@@ -13,7 +13,7 @@
 
 setup(
     name="latch",
-    version="v2.53.4",
+    version="v2.53.5",
     author_email="kenny@latch.bio",
     description="The Latch SDK",
     packages=find_packages(),