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martinappberg/README.md

Martin Kjellberg

πŸ‘¨β€πŸŽ“ M.S. Medical Biotechnology from KTH | 🧬 AI Genomics Research at Stanford | πŸ’» Full-Stack Developer

About Me

I'm a passionate technologist with a strong software engineering and biotechnology background. Currently, I'm working as a full-stack developer at UX Stream and applying AI models to whole-genome sequencing data in Stanford University's Snyder lab. My diverse experience spans from founding an IT consultancy to developing low-latency streaming solutions for mobile devices.

πŸ”¬ Current Research

  • Classifying diseases using AI models on whole-genome sequencing data
  • Building pipelines for high-throughput analysis with graph neural networks
  • Integrating proteomics with sequencing data through pQTL-analysis

πŸ› οΈ Notable Open-Source Projects

  1. (coming soon) ANNOVAR AI

    • AI models for Annotated VCF files through ANNOVAR
    • Improved, interpretable disease classification through graph neural networks of gene-gene interactions.
  2. HEAL (Hierarchical Estimate from Agnostic Learning)

    • Machine learning-based genome analysis and risk prediction framework
    • Supports mutation burden matrix analysis (CSV format)
    • Outputs disease gene lists, genetic risk prediction models, and prediction performance summaries

πŸ’Ό Work Experience

  • Full-Stack Software Engineer at UXStream

    • Developed low-latency streaming solutions for mobile devices
    • Reduced latency by 75% over 5G networks
  • Founder and Software Engineer at Appberg

    • IT consultancy firm with 30+ clients
    • Developed various SaaS platforms and mobile apps

πŸŽ“ Education

  • Stanford University School of Medicine - Master's Thesis Applying AI Models to Whole-Genome Sequencing Data
  • KTH Royal Institute of Technology - M.S. in Medical Biotechnology, B.S. in Chemical Engineering

πŸ›  Technical Skills

  • Languages: Rust, Python, TypeScript, JavaScript, Kotlin, Swift, Objective-C, R, MATLAB
  • Frameworks: Scikit-Learn, PyTorch, Tensorflow, React / React Native, Flatbuffers, Tokio
  • Developer Tools: Git, Docker, Slurm, Azure, AWS, Firebase

πŸ“« Connect with Me


⭐️ From martinappberg

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  1. Open-Patient-Cases/opc-platform Open-Patient-Cases/opc-platform Public

    JavaScript 1

  2. pirocv/HEAL pirocv/HEAL Public

    Python 1