eggla v1.0.3

Fixes

• In R/*_aucs.R, R/*_slopes.R,
  • fix: sort rows by IDs (#127, thanks @DrGengWang).
  • fix: ensure denominator's length depends on the number of knots. (#127, thanks @DrGengWang)

Tests

• In tests/testthat,
  • test: update snapshots

What's Changed

• fix: ID ordering differences *_aucs() / *_slopes() by @mcanouil in #128

Full Changelog: v1.0.2...v1.0.3

eggla v1.0.2

Fixes

• In R/*_aucs.R, R/*_slopes.R,
  • fix: use ID as character and use merge to combine data.frames/matrices.

Chores

• In R, tests/testthat,
  • chore: replace 1: with seq_len and $ with [[.

Tests

• In tests/testthat,
  • test: cleanup duplicated and outdated tests.
  • test: add snapshot tests.

What's Changed

• build: growthcleanr from GitHub by @mcanouil in #125
• fix: use ID as character and use merge to combine data.frames/matrices. by @mcanouil in #126

Full Changelog: v1.0.0...v1.0.2

eggla v1.0.1

Build

• In DESCRIPTION,
  • build: add growthcleanr GitHub repository as remote.

Full Changelog: v1.0.0...v1.0.1

eggla v1.0.0

Build

• In inst/bin,
  • build: update PLINK2 to 5th of January 2024 version (Linux 64-bit build).
• In .github,
  • build: upgrade BCFtools to 1.19.
  • build: upgrade R to 3.4.2.
• In DESCRIPTION,
  • build: upgrade R packages to latest versions.

Chores

• In inst/CITATION,
  • chore: convert CFF to bibentry.
• In citation.cff,
  • chore: update citation file.
• In R/gsp.R,
  • chore: add @export for S3 method.

What's Changed

• chore: bump year license by @mcanouil in #119
• chore: devcontainer update via dependabot by @mcanouil in #120
• chore: update cff by @mcanouil in #121
• ci: add dev devcontainer and tweak workflow by @mcanouil in #122
• chore: 1.0.0-pre by @mcanouil in #123

Full Changelog: v0.20.0...v1.0.0

eggla v1.0.0

Build

• In inst/bin,
  • build: update PLINK2 to 5th of January 2024 version (Linux 64-bit build).
• In .github,
  • build: upgrade BCFtools to 1.19.
  • build: upgrade R to 3.4.2.
• In DESCRIPTION,
  • build: upgrade R packages to latest versions.

Chores

• In inst/CITATION,
  • chore: convert CFF to bibentry.
• In citation.cff,
  • chore: update citation file.
• In R/gsp.R,
  • chore: add @export for S3 method.

What's Changed

• build(deps): bump actions/checkout from 3 to 4 by @dependabot in #117
• build(deps): bump docker/login-action from 2 to 3 by @dependabot in #118
• chore: bump year license by @mcanouil in #119
• chore: devcontainer update via dependabot by @mcanouil in #120
• chore: update cff by @mcanouil in #121
• ci: add dev devcontainer and tweak workflow by @mcanouil in #122
• chore: 1.0.0-pre by @mcanouil in #123

Full Changelog: v0.19.6...v1.0.0-rc

eggla 0.20.0

Fixes

• In R, and vignettes/articles,
  • fix: add missing knot at 0.75 in linear splines model.

Chores

• In .github,
  • chore: update infrastructure based on Devcontainer.

Full Changelog: v0.19.6...v0.19.7

eggla 0.19.6

Fixes

• In R/run_eggla_gwas.R,
  • fix: GWAS results are now exported as a tab-delimited compressed file (i.e., txt.gz).

Full Changelog: v0.19.5...v0.19.6

eggla 0.19.5

Fixes

• In R/egg_model.R,
  • fix: turns warnings into errors when fitting the model for the first time.

Full Changelog: v0.19.4...v0.19.5

eggla 0.19.4

Fixes

• In R/on_attach.R, R/plot_aucs.R, R/plot_egg_aucs.R, R/predict_bmi.R,
  R/run_eggla_gwas.R, R/run_eggla_lmm.R,
  • fix: linters warnings.
• In R/egg_model.R,
  • fix: in case or error, also increase the umber of EM iterations.

Full Changelog: v0.19.3...v0.19.4

eggla 0.19.3

Fixes

• In R/run_eggla_gwas.R,
  • fix: update commands to get version.
  • fix: 'ax' replaced with 'omitted' in PLINK2 output.

Full Changelog: v0.19.2...v0.19.3