Metagenome Assembled Genome Abundance Analysis

This repo uses only an RMarkdown script as input. I followed the following tutorial: https://kbroman.org/blog/2019/02/18/omg_binder/

It plots a heatmap after you mapped reads in your samples against bins or genomes you created.

• Launch in RStudio:

Input

Example files included:

• MetaG-heatmap-Binder.Rmd - RMarkdown file with R code chunks to plot a heatmap in RStudio
• input_matrix_v2.txt - A sample input file where we mapped reads from several samples against MAG bins that we had created.

Output

Example output includes:

Author ORCID IDs:

• Marian Schmidt: https://orcid.org/0000-0002-2866-4496
• Guillaume Jospin : https://orcid.org/0000-0002-8746-2632
• Laetitia Wilkins: https://orcid.org/0000-0003-3632-2063
• Charles Reid: NA