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Handle groups in hit extraction view. #84

Merged
merged 17 commits into from
May 2, 2024
Merged

Handle groups in hit extraction view. #84

merged 17 commits into from
May 2, 2024

Commits on Apr 29, 2024

  1. Fix AMR and VF hit counts when including taxids.

    @njohner
    njohner committed Apr 29, 2024
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  2. Add dependency to django autocomplete light.

    @njohner
    njohner committed Apr 29, 2024
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  3. Use dal for accession choices and n_excluded in hit extraction form.

    @njohner
    njohner committed Apr 29, 2024
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Commits on May 2, 2024

  1. Remove unused lst_plasmids parameter from get_genomes_description.

    @njohner
    njohner committed May 2, 2024
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  2. Add tests for AccessionFieldHandler.

    @njohner
    njohner committed May 2, 2024
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  3. Better separate filtering stage in AccessionFieldHandler.get_choices.

    @njohner
    njohner committed May 2, 2024
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  4. Handle groups in AccessionFieldHandler.

    @njohner
    njohner committed May 2, 2024
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  5. Also exclude from choices taxids selected through groups.

    @njohner
    njohner committed May 2, 2024
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  6. Remove unnecessary with_groups parameter.

    @njohner
    njohner committed May 2, 2024
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  7. Also exclude groups containing an excluded taxid

    @njohner
    njohner committed May 2, 2024
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  8. Implement just excluding taxids contained in group exclusion list. 

    This introduces a new argument exclude_taxids_in_groups to
AccessionFieldHandler.get_choices.
    @njohner
    njohner committed May 2, 2024
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  9. Handle groups correctly in AutocompleteTaxid view.

    @njohner
    njohner committed May 2, 2024
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  10. Handle groups correctly in AutocompleteNMissing view.

    @njohner
    njohner committed May 2, 2024
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  11. Handle missing arguments in autocomplete views.

    @njohner
    njohner committed May 2, 2024
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  12. Fix bug in custom plots view with orthogroups.

    @njohner
    njohner committed May 2, 2024
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  13. Add tests for the autocomplete views.

    @njohner
    njohner committed May 2, 2024
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  14. Add changelog.

    @njohner
    njohner committed May 2, 2024
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