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Feature/bridging graph environment #41

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Closed

Feature/bridging graph environment #41

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SridharJagannathan
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First version (not ready yet). Might be used something like this:

library(nat.flybrains)
shortest_bridging_seq(sample='DsecF', ref=JFRC2)
bg=bridging_graph(reciprocal = 1.01)
bg2=igraph::delete.edges(bg, 'DsecI|JFRC2')
bg2=igraph::delete.edges(bg2, 'DsecI|JFRC2')
bg2=igraph::delete.edges(bg2, 'DsecI|JFRC2')
bg2=igraph::delete.edges(bg2, 'JFRC2|DsecI')
bg2=igraph::delete.edges(bg2, 'JFRC2|DsecI')
plot(bg2)
nat.templatebrains:::set_bridging_graph(bg2, reciprocal = 1.01)
shortest_bridging_seq(sample='DsecF', ref=JFRC2)

Sridhar Jagannathan and others added 2 commits May 23, 2019 17:58
Fixed issue #39
9609eb9
@SridharJagannathan
Basic implementation of environment to store bridging_graph
1679dac 
* coded with Greg
* can get/set ok BUT
* complication of what reciprocal argument must be specified
* also surgery on the graph is complicated by the fact that there may be 2 or even 4 edges between each pair of nodes.
@jefferis
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I'm leaving this open for now, but this now feels a bit complicated and I think the likelihood is that we will be fine with the new #43 / #44 via argument to specify particular paths.

@jefferis
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jefferis commented Oct 3, 2022

Closing as in the end we will not use this.

@jefferis jefferis closed this Oct 3, 2022
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@SridharJagannathan @jefferis