Rare Disease Celltyping apps

¶ Creators: ¶

¶ Bobby Gordon-Smith, Jai Chapman, Brian M. Schilder, Nathan G. Skene

¶ README updated: Jan-24-2023 ¶

Components

Home page

The HTML, CSS, and images for the website are stored in the home/ directory. If you put the contents of this directory up as its own GitHub repo, you can then access the website using Github pages.

It provides links to the interactive version of the cell select app, but I haven’t included the print-friendly version (which uses the ontologyPlot package rather than ggnetwork).

Pheno select app

Select results by phenotype.

Cell select app

Select results by cell type. Currently uses the version originally created by @bobGSmith.

Cell select print friendly

This is basically the same as the interactive version of the app. The plot is better suited to printing (as it has less overlapping, and the way it is laid out more clearly represents the ontology levels). However, this type of plot was not supported by plotly and could not be interactive.

Contact

Neurogenomics Lab

UK Dementia Research Institute
Department of Brain Sciences
Faculty of Medicine
Imperial College London
GitHub
DockerHub