Detecting errors in data unstaging #5345
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…/out Signed-off-by: jorgee <jorge.ejarque@seqera.io>
Signed-off-by: jorgee <jorge.ejarque@seqera.io>
Signed-off-by: jorgee <jorge.ejarque@seqera.io>
Signed-off-by: jorgee <jorge.ejarque@seqera.io>
Signed-off-by: jorgee <jorge.ejarque@seqera.io>
pditommaso
reviewed
Dec 1, 2024
| local last_err=$? | ||
| ## capture the task error first or fallback to unstage error | ||
| exit_status=${nxf_main_ret:=0} | ||
| [[ ${exit_status} -eq 0 && ${nxf_unstage_ret:0} -ne 0 ]] && exit_status=${nxf_unstage_ret} |
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Why there's ${nxf_unstage_ret:0} in the condition and exit_status=${nxf_unstage_ret} in the assignment? it may be better to use a local intermediate variable as for local last_err=$?
pditommaso
reviewed
Dec 1, 2024
| if [[ ${nxf_main_ret:=0} == 0 ]]; then | ||
| ## Data unstaging redirecting stdout and stderr with append mode | ||
| (set -e -o pipefail; ({{unstage_cmd}} | tee -a {{stdout_file}}) 3>&1 1>&2 2>&3 | tee -a {{stderr_file}}) | ||
| nxf_unstage_ret=$? |
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Was this tested which S3 uploads that are made in a parallel logic? see here
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close #3711