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Export GISAID accessions from metadata into Auspice JSONs #137

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huddlej opened this issue Dec 28, 2023 · 0 comments · Fixed by #138
Closed

Export GISAID accessions from metadata into Auspice JSONs #137

huddlej opened this issue Dec 28, 2023 · 0 comments · Fixed by #138
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enhancement New feature or request source: office hours Issue mentioned during office hours

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huddlej commented Dec 28, 2023

Description

Since the same strain can appear multiple times in GISAID, we should provide the unique GISAID accessions we use for each sequence that appears in our trees. We also modify the original strain names, in some cases, to standardize leading zero padding in ids, etc. such that users cannot find records in GISAID's search interface without the accession.
@huddlej huddlej added enhancement New feature or request source: office hours Issue mentioned during office hours labels Dec 28, 2023
huddlej added a commit that referenced this issue Dec 28, 2023
@huddlej
Add Auspice JSON colorings for HA/NA accessions
ce7af43 
Adds coloring entries for the HA and NA accessions associated with each
sequence in a build, so this information appears in the public trees and
allows users to determine the sequences that correspond with each strain
name.

Closes #137
@huddlej huddlej mentioned this issue Dec 28, 2023
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Add Auspice JSON colorings for HA/NA accessions nextstrain/seasonal-flu
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