Add Auspice JSON colorings for HA/NA accessions #138
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Adds coloring entries for the HA and NA accessions associated with each sequence in a build, so this information appears in the public trees and allows users to determine the sequences that correspond with each strain name. Closes #137
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Running a quick test: https://github.com/nextstrain/seasonal-flu/actions/runs/7350669867 |
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Test run succeeded, and I see that the accessions are being included as expected in the downloaded Nexus file (and not in the nwk file).
[non-blocking] I slightly lean towards having these in the "acknowledgements.tsv" file, but I imagine that using Nexus might be the fastest solution for now. Just a note that there is a slight pause in the site if the user selects "Color By: accession..." from the drop down, but I hope this occurrence will be infrequent and non-blocking.
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Thanks, @j23414! The implementation as a coloring is not ideal, but hopefully this will be useful for people and we'll eventually setup an augur/auspice interface that doesn't require these to be colorings. |
Following up on @huddlej's comment <#138 (comment)> Instead of using the accessions as colorings to force their inclusion in the build, just include them as `metadata_columns`.
Description of proposed changes
Adds coloring entries for the HA and NA accessions associated with each sequence in a build, so this information appears in the public trees and allows users to determine the sequences that correspond with each strain name.
Related issue(s)
Closes #137
Checklist