Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

changed logos to the custom w/ ribosome #51

Merged
merged 5 commits into from
Apr 12, 2024
Merged

changed logos to the custom w/ ribosome #51

merged 5 commits into from
Apr 12, 2024

Conversation

JackCurragh
Copy link
Contributor

Just replaced the logos with versions that have a ribosome in them.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/riboseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@JackCurragh JackCurragh mentioned this pull request Apr 12, 2024
Merged
10 tasks
@github-actions GitHub Actions
Copy link

github-actions bot commented Apr 12, 2024 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit fe07d41

+| ✅ 174 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 1.0.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.ribo_database_manifest
  • files_unchanged - File ignored due to lint config: assets/nf-core-riboseq_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-riboseq_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-riboseq_logo_dark.png
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_ci - actions_ci

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-04-12 10:38:35

@JackCurragh
Copy link
Contributor Author

JackCurragh commented Apr 12, 2024 •
edited
Loading

I didn't update nf-core/logos leading to the linting errors. On it now

Misunderstood how this works but still looking into it

@pinin4fjords
Copy link
Member

Assuming this works, don't forget changelog.

@JackCurragh
Copy link
Contributor Author

I was wondering about that but since I need to say who reviewed it I decided to skip for now assuming it needs to be redone before final release anyway. Can I just assume you will be the reviewer?

Or have I misunderstood?

FelixKrueger
FelixKrueger approved these changes Apr 12, 2024
View reviewed changes
Copy link
Contributor

@FelixKrueger FelixKrueger left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks for adding.

@FelixKrueger FelixKrueger merged commit 95e4fa4 into dev Apr 12, 2024
109 checks passed
@FelixKrueger FelixKrueger deleted the logos branch April 12, 2024 11:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@FelixKrueger FelixKrueger FelixKrueger approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@JackCurragh @pinin4fjords @FelixKrueger