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Prepare for 2.6 release#131

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maxulysse merged 16 commits intonf-core:devnf-core/sarek:devfrom maxulysse:prepare2.6maxulysse/nf-core_sarek:prepare2.6Copy head branch name to clipboardFeb 28, 2020

+95-75

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Commits on Feb 27, 2020

• update environment.yml

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  39897b6

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• add single_end params and set it to false to remove lint warning

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  c24c49c

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• spacing

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• fix link

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• fix link

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• remove link to figure

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• update snpeff container

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• fix URLs

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• update vep containers + docs

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• refactor ASCAT

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• update vep download script

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• keep 1.9 version of bcftools, htslib and samtools due to incompatibility issues

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• keep tiddit 2.7.1 because recipe is still broken on bioconda

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Commits on Feb 28, 2020

• handle fastq and fq files but give out warning

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  a6d82b5

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• update CHANGELOG

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• exit instead of warning

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