Code

updates on DSL2#257

Code

Merged

FriederikeHanssen merged 13 commits intonf-core:dsl2nf-core/sarek:dsl2from maxulysse:dsl2_updatesmaxulysse/nf-core_sarek:dsl2_updatesCopy head branch name to clipboardJul 29, 2020

+395-216

Commits

Commits on Jul 24, 2020

• update with new folder structure

  maxulysse

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  34d15f6

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• fix names

  maxulysse

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  8a8c8aa

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• rename files

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  5dcf404

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• add conf/modules.config file

  maxulysse

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  62fcea5

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• typo

  maxulysse

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  cb1eefd

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• use qc_trim subworkflow for fastqc + trimgalore

  maxulysse

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  4043b8d

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• back to markduplicates

  maxulysse

  committed
  926c4e9

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• code polishing

  maxulysse

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  6e5f2da

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• code polishing

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Commits on Jul 25, 2020

• fix markduplicates and add baserecalibrator

  maxulysse

  committed
  216a153

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• fix bwamem2_mem process

  maxulysse

  committed
  b24c9c6

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• add MERGE_BAM_RECAL

  maxulysse

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  496b745

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• add gatherbqsrreports

  maxulysse

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  6f3c37f

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