Code

Add VCF QC#522

Code

Merged

maxulysse merged 12 commits intonf-core:devnf-core/sarek:devfrom FriederikeHanssen:add_qcFriederikeHanssen/sarek:add_qcCopy head branch name to clipboardApr 21, 2022

+238-109

Commits

Commits on Apr 19, 2022

• add vcf vc workflow

  FriederikeHanssen

  committed
  4c78bd0

  Copy full SHA for 4c78bd0

• Suggestion for how to deal with multi tools for annotation and qc

  FriederikeHanssen

  committed
  e5995cf

  Copy full SHA for e5995cf

• add tool naming to meta-map for all callers

  FriederikeHanssen

  committed
  9413cff

  Copy full SHA for 9413cff

• add tool for annotation to annotate multiple tools for the same sample

  FriederikeHanssen

  committed
  2ceb02c

  Copy full SHA for 2ceb02c

• Add multiqc

  FriederikeHanssen

  committed
  88a25d8

  Copy full SHA for 88a25d8

• tampering with the config

  FriederikeHanssen

  committed
  8f69345

  Copy full SHA for 8f69345

• remove comments

  FriederikeHanssen

  committed
  c183f1e

  Copy full SHA for c183f1e

Commits on Apr 20, 2022

• Fix trimgalore used output

  FriederikeHanssen

  committed
  dad599e

  Copy full SHA for dad599e

• Fix BQSR output for reporting

  FriederikeHanssen

  committed
  d6eaa44

  Copy full SHA for d6eaa44

Commits on Apr 21, 2022

• Add snpeff file size as recommended in multiQC issue 229

  FriederikeHanssen

  committed
  daffd96

  Copy full SHA for daffd96

• Finish configuration for MQC

  FriederikeHanssen

  committed
  c034f5f

  Copy full SHA for c034f5f

• Fix fastqc output path

  FriederikeHanssen

  committed
  25ded7d

  Copy full SHA for 25ded7d