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Fix validation of input when launching from website #813

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merged 2 commits into from
Nov 8, 2022
Merged

Fix validation of input when launching from website #813

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9b49dea
taking a peak at rnaseq to fix input validation
FriederikeHanssen Nov 7, 2022
d1dfdc8
Merge upstream/dev
FriederikeHanssen Nov 8, 2022
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -38,6 +38,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#793](https://github.com/nf-core/sarek/pull/793) - Remove DeepVariant GVCF from annotation
- [#794](https://github.com/nf-core/sarek/pull/794) - Fix publishing for unzipped reference files
- [#807](https://github.com/nf-core/sarek/pull/807) - Fix read group when uBAMs are provided (see issue [#732](https://github.com/nf-core/sarek/issues/732))
- [#813](https://github.com/nf-core/sarek/pull/813) - Fix input validation when launching from website (see issue [#694](https://github.com/nf-core/sarek/issues/694))
- [#814](https://github.com/nf-core/sarek/pull/814) - Fix readgroups when using DragMap together with FreeBayes or Mutect2 (see issue [#780](https://github.com/nf-core/sarek/issues/780))

### Deprecated
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2 changes: 1 addition & 1 deletion nextflow_schema.json
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Expand Up @@ -31,7 +31,7 @@
"type": "string",
"format": "file-path",
"mimetype": "text/csv",
"pattern": "\\.csv$",
"pattern": "^\\S+\\.csv$",
"schema": "assets/schema_input.json",
"description": "Path to comma-separated file containing information about the samples in the experiment.",
"help_text": "A design file with information about the samples in your experiment. Use this parameter to specify the location of the input files. It has to be a comma-separated file with a header row. See [usage docs](https://nf-co.re/sarek/usage#input).\n\nIf no input file is specified, sarek will attempt to locate one in the `{outdir}` directory.",
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