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Merge-template-2.9 & mirbase fixes #272

Merged
merged 19 commits into from
Sep 1, 2023
Merged

Merge-template-2.9 & mirbase fixes #272

merged 19 commits into from
Sep 1, 2023

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apeltzer
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/smrnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

robsyme and others added 3 commits August 23, 2023 13:06
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github-actions bot commented Aug 30, 2023 •
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nf-core lint overall result: Passed ✅

Posted for pipeline commit 9c09116

+| ✅ 158 tests passed       |+

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-09-01 11:36:44

@apeltzer apeltzer added this to the 2.2.1 milestone Aug 30, 2023
@apeltzer apeltzer mentioned this pull request Aug 30, 2023
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grst
grst requested changes Aug 30, 2023
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Found a couple of minor things

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@apeltzer apeltzer requested a review from grst August 30, 2023 07:51
grst
grst approved these changes Aug 30, 2023
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LGTM now!

christopher-mohr
christopher-mohr reviewed Aug 30, 2023
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As just discussed LGTM, we just need to adapt to the new samtools subworkflows.

@apeltzer apeltzer changed the title Merge-template-2.9 Merge-template-2.9 & mirbase fixes Sep 1, 2023
christopher-mohr
christopher-mohr approved these changes Sep 1, 2023
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One comment, apart from that LGTM!

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@apeltzer apeltzer merged commit 2b4253f into dev Sep 1, 2023
@apeltzer apeltzer deleted the merge-template-2.9 branch September 1, 2023 12:31
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@christopher-mohr christopher-mohr christopher-mohr approved these changes

@grst grst grst approved these changes

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@apeltzer @christopher-mohr @grst @robsyme