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Added -profile wave to the template. #2941

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merged 7 commits into from
May 2, 2024
Merged

Added -profile wave to the template. #2941

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952ae66
Template: Add config profile 'wave'
ewels Apr 30, 2024
8e9b3e6
Move Wave above GitPod
ewels Apr 30, 2024
8875f10
Add 'singularity.ociAutoPull = true'
ewels Apr 30, 2024
6dc46f7
Harshil aligned and Maxime sorted
ewels Apr 30, 2024
ac5d1e8
Added 'apptainer.ociAutoPull'
ewels Apr 30, 2024
76ed900
Add minimum Nextflow version to the docs
ewels Apr 30, 2024
cc4e416
More @drpatelh alignment to satisfy @mashehu
ewels May 2, 2024
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2 changes: 2 additions & 0 deletions nf_core/pipeline-template/docs/usage.md
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Expand Up @@ -163,6 +163,8 @@ If `-profile` is not specified, the pipeline will run locally and expect all sof
- A generic configuration profile to be used with [Charliecloud](https://hpc.github.io/charliecloud/)
- `apptainer`
- A generic configuration profile to be used with [Apptainer](https://apptainer.org/)
- `wave`
- A generic configuration profile to enable [Wave](https://seqera.io/wave/) containers. Use together with one of the above (requires Nextflow ` 24.03.0-edge` or later).
- `conda`
- A generic configuration profile to be used with [Conda](https://conda.io/docs/). Please only use Conda as a last resort i.e. when it's not possible to run the pipeline with Docker, Singularity, Podman, Shifter, Charliecloud, or Apptainer.

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7 changes: 7 additions & 0 deletions nf_core/pipeline-template/nextflow.config
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Expand Up @@ -171,6 +171,13 @@ profiles {
shifter.enabled = false
charliecloud.enabled = false
}
wave {
apptainer.ociAutoPull = true
singularity.ociAutoPull = true
wave.enabled = true
wave.freeze = true
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I see in the documentation that we would need to provide wave.build.repository together with wave.freeze = true. Is it required? Would it be safer to let users provide both parameters.

wave.strategy = 'conda,container'
}
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gitpod {
executor.name = 'local'
executor.cpus = 4
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