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FIX: Set TemplateFlow directory world-writeable #1501

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Feb 8, 2019
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FIX: Set TemplateFlow directory world-writeable #1501

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11 changes: 7 additions & 4 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -160,10 +160,8 @@ ENV TEMPLATEFLOW_HOME="/opt/templateflow"
RUN pip install "datalad==0.10.0" && \
rm -rf ~/.cache/pip

RUN git config --global user.name "First Last" && \
git config --global user.email "mail@domain.com"

RUN datalad install -r https://github.com/templateflow/templateflow.git && \
RUN umask 000 && \
datalad install -r https://github.com/templateflow/templateflow.git && \
datalad get $TEMPLATEFLOW_HOME/tpl-MNI152NLin2009cAsym/*_T1w.nii.gz \
$TEMPLATEFLOW_HOME/tpl-MNI152NLin2009cAsym/*_desc-brain_mask.nii.gz \
$TEMPLATEFLOW_HOME/tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-fMRIPrep_boldref.nii.gz \
Expand All @@ -175,6 +173,11 @@ RUN datalad install -r https://github.com/templateflow/templateflow.git && \
$TEMPLATEFLOW_HOME/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_label-brain_probseg.nii.gz \
$TEMPLATEFLOW_HOME/tpl-OASIS30ANTs/tpl-OASIS30ANTs_res-01_desc-BrainCerebellumExtraction_mask.nii.gz

# Stop datalad complaining about user info when using templateflow on Singularity
RUN cd $TEMPLATEFLOW_HOME && \
git config user.name "fMRIPrep User" && \
git config user.email "mail@domain.tld"

# Installing dev requirements (packages that are not in pypi)
WORKDIR /src/
COPY requirements.txt requirements.txt
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