FIX: Hard-wire MNI152NLin2009cAsym as standard space for SDC-SyN
#63
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oesteban
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Nov 27, 2019
| @@ -153,6 +151,8 @@ def init_syn_sdc_wf(omp_nthreads, epi_pe=None, | |||
| # 1) BOLD -> T1; 2) MNI -> T1; 3) ATLAS -> MNI | |||
| transform_list = pe.Node(niu.Merge(3), name='transform_list', | |||
| mem_gb=DEFAULT_MEMORY_MIN_GB) | |||
| transform_list.inputs.in3 = resource_filename( | |||
| 'sdcflows', 'data/fmap_atlas_2_MNI152NLin2009cAsym_affine.mat') | |||
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In reality, we only have this pre-calculated affine, so offering to switch was asking for trouble.
effigies
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Nov 27, 2019
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Oct 23, 2020
This PR attempts to provide a more reliable framework to build fieldmap estimation workflows. Implicitly, it will help addressing issues regarding data conformity (e.g., nipreps#63, nipreps#64, nipreps#65) and also ease larger refactors such as #20, nipreps#21, nipreps#26, and nipreps#101.
oesteban
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Oct 23, 2020
This PR attempts to provide a more reliable framework to build fieldmap estimation workflows. Implicitly, it will help addressing issues regarding data conformity (e.g., nipreps#63, nipreps#64, nipreps#65) and also ease larger refactors such as #20, nipreps#21, nipreps#26, and nipreps#101.
oesteban
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Oct 26, 2020
This PR attempts to provide a more reliable framework to build fieldmap estimation workflows. Implicitly, it will help addressing issues regarding data conformity (e.g., nipreps#63, nipreps#64, nipreps#65) and also ease larger refactors such as #20, nipreps#21, nipreps#26, and nipreps#101.
oesteban
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Nov 14, 2020
This PR attempts to provide a more reliable framework to build fieldmap estimation workflows. Implicitly, it will help addressing issues regarding data conformity (e.g., nipreps#63, nipreps#64, nipreps#65) and also ease larger refactors such as #20, nipreps#21, nipreps#26, and nipreps#101.
oesteban
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Nov 18, 2020
This PR attempts to provide a more reliable framework to build fieldmap estimation workflows. Implicitly, it will help addressing issues regarding data conformity (e.g., nipreps#63, nipreps#64, nipreps#65) and also ease larger refactors such as #20, nipreps#21, nipreps#26, and nipreps#101.
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Continuing with #55, this PR re-enables SDC-SyN to work with fMRIPrep.