Code

Resolving issues #17, #34, #42#44

Code

Merged

Theo-qua merged 57 commits intomainocbe-uio/MADMMplasso:mainfrom issue-17ocbe-uio/MADMMplasso:issue-17Copy head branch name to clipboardJun 26, 2024

+620-436

Commits

Commits on Apr 11, 2024

• Excluding *.out from git and package

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• Restricting evaluation of legacy to MADMMplasso() (#17)

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• Tying convergence prints on C++ to my_print

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• Defining my_values as const (#17)

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Commits on May 23, 2024

• Defining my_values as const (#17)

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• Fixed indentation

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• Removed unused plot from tests

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• Removed and de-nested some definitions (#17)

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• Removed and de-nested some definitions (#17)

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• Removed duplicated loop (#17)

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• Removed invmat from argument (#17)

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• Removed old named file (WTF?)

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• Faster calculation of beta_hat (#17)

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• Reduced usage of Rcpp::List (#17)

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• De-nested several arma definitions (#17)

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• Redefined gg as rowvec (#17)

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• Fixed unit tests (#17)

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• Changed output of reg() from List to mat (#17)

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• Dropped unused arguments

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• Small reduction in number of declarations

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• Adjusted documentation on function arguments (#17)

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• Adjusted unit test expectations (#17)

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• Replacing Rcpp::List with arma::field (#17)

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• Minor cleanup

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• Optimized multiplications involving diagonal matrix (#17)

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• A bit more optimization for #17

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• Merge branch 'rcppclock' into issue-17

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• Updated feature version

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  5d3f495

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• Moved DD3_diag definition out the loop (#17)

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• Added TODOs

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• Added description to function (#5)

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• Redefining invmat as matrix (#17)

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• Simplified some calculations (#17)

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Commits on Jun 24, 2024

• Disallow parallel and pal to be both TRUE (#34)

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• Added tests to close #34 and debug #17

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• Adjusted argument order for C++ calls (#17)

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• squash! Added tests to close #34 and debug #17

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• Fixed MADMMplasso(parallel, !pal, legacy)

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• Added comments to code

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• Fixed MADMMplasso(parallel, !pal, !legacy) (#17)

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• Added tests for #34 and #17

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Commits on Jun 25, 2024

• Updated feature version

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• Added a couple more unit tests (#17)

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• Added TODO for #42

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• Post-processing loop_output on C++ (closes #42)

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• Updated feature version

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• Fixed output of `MADMMplasso(legacy = FALSE, parallel = FALSE, pal = FALSE) (#17)

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• Improved post-processing of C++ output

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• Adapted tests to new C++ output format (#17)

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• Replace 0 with NA on reg()

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• Updated docs

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• Adjusted test seed (#17)

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• Suppressing messages on tests

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• Removed feature version

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Commits on Jun 26, 2024

• Hard-coded cl = 2 on parallel tests

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• Restricting parallel tests to Linux and Mac

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• Delinted

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