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Implement local providers for fetch_chromsizes and fetch_centromeres #156

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nvictus merged 2 commits into open2c:main from nvictus:feat-local-provider2

May 30, 2023

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nvictus commented May 27, 2023 •

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Local provider is now the default, "ucsc" is the alternative
Uses assembly_info(db) to get information from local storage (.seqinfo.tsv and .cytoband.tsv in local storage), using default contigs and ordering as defined in _assemblies.yml.

nvictus added 2 commits

May 27, 2023 19:18


          Implement local providers for fetch_chromsizes and fetch_centromeres

4d5e6f6


          Use old Union typing syntax

8f487b6

nvictus requested a review from gfudenberg

May 28, 2023 17:40

nvictus merged commit 561a4f2 into open2c:main

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