Repositories list

• ADSP_AutoQA

  Public
  Automated QA for ADSP processing

  Python

  •

  MIT License

  •1•1•0•0•Updated Oct 22, 2024Oct 22, 2024

• NerfOrganRecon

  Public
  How to run code to reconstuct an organ surface from an .mp4 video

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• ES-1400

  Public
  Python

  •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

• dss_fmri_atlas

  Public
  Diffusion-informed spatial smoothing fMRI atlas

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• influence_of_fusion_on_pancreas_segmentation

  Public
  Python

  •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• Informatics_ADSP

  Public
  Shell

  •

  MIT License

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• AtlasToDiffusionReg

  Public
  singularity to register an atlas to the diffusion space of a subject

  Jupyter Notebook

  •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

• nucleus_and_cell_classification_on_he

  Public
  Classify nuclei/cells on intestinal H&E into 14 different classes

  Jupyter Notebook

  •0•0•0•0•Updated Aug 18, 2024Aug 18, 2024

• MxIF_Registration

  Public
  Python

  •0•1•0•0•Updated Aug 16, 2024Aug 16, 2024

• Decathlon_wo_Doctorate

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

• PreQual

  Public
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

  qualitymriassurance+ 2preprocessingdiffusion

  Python

  •

  Other

  •8•44•1•1•Updated Aug 2, 2024Aug 2, 2024

• UNesT

  Public
  The official Pytorch implementation of UNesT

  Python

  •

  MIT License

  •5•21•0•0•Updated Aug 1, 2024Aug 1, 2024

• vss_fmri

  Public
  Vasculature-informed spatial smoothing for fMRI

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• michael_kim_overview

  Public
  Overview of all projects by Michael Kim (kimm58)

  0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

• Variance-Aging-Diffusion

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024

• Synb0-DISCO

  Public
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

  distortion-correctiondiffusion-mrideep-learning

  Python

  •29•59•1•1•Updated Jul 19, 2024Jul 19, 2024

• ChatRTX

  Public
  A developer reference project for creating Retrieval Augmented Generation (RAG) chatbots on Windows using TensorRT-LLM

  Python

  •

  Other

  •330•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• DAPI_RegNet

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• hovernets_on_vhe

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 15, 2024May 15, 2024

• he_stain_translation_cyclegan

  Public
  Python

  •0•0•0•0•Updated May 14, 2024May 14, 2024

• nnUNet_midl_2024

  Public
  add custom models

  Python

  •

  Apache License 2.0

  •1.7k•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• DeepN4

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Mar 12, 2024Mar 12, 2024

• S-EFOV

  Public
  S-EFOV: Thoracic CT-based Body Composition Analysis with Semantically Extended FOV

  Other

  •2•13•0•0•Updated Feb 29, 2024Feb 29, 2024

• WM_fMRI_atlas_Yang

  Public
  0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• SynBOLD-DisCo

  Public
  Synthetic BOLD images for distortion correction of fMRI without additional calibration scans

  deep-learningdistortion-correctionfmri+ 1bold

  Python

  •4•17•0•0•Updated Feb 12, 2024Feb 12, 2024

• DeepLungScreening

  Public
  Python

  •0•3•0•0•Updated Feb 11, 2024Feb 11, 2024

• cornn_tractography

  Public
  Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

  deep-learningdiffusion-mritractography+ 2t1-weighted-mriconvolutional-recurrent-neural-network

  Python

  •1•13•0•0•Updated Feb 6, 2024Feb 6, 2024

• deedsBCV_multimodal_mri

  Public
  Forked to include pre and post processing to enable registration of abdominal T1 and T2 MRI. Both of these modlaities are differently anisotropic. These modifications allow for deeds deformably registered moving image to align with the unaltered anisotropic fixed image.

  C++

  •

  MIT License

  •32•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• DAPIArtifactRemoval

  Public
  Shell

  •0•1•0•0•Updated Dec 6, 2023Dec 6, 2023

• SLANTbrainSeg

  Public
  Deep Whole Brain Segmentation Using SLANT Method

  Python

  •

  Other

  •32•110•0•0•Updated Dec 3, 2023Dec 3, 2023