Repositories list

• Colovas_Data_Accessibility

  Public
  New repository for Data Accessibility project begun by Adena Collens.

  HTML

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• schlosslab.github.io

  Public
  The website for the Schloss Lab at the University of Michigan

  HTML

  •30•7•2•0•Updated Dec 9, 2024Dec 9, 2024

• clustur

  Public
  Cluster algorithms from mothur in R

  C++

  •

  Other

  •0•0•1•0•Updated Nov 26, 2024Nov 26, 2024

• Schloss_phylotypr_MRA_2024

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• Johnson_clustur_MRA_2024

  Public
  TeX

  •

  MIT License

  •0•1•0•0•Updated Sep 9, 2024Sep 9, 2024

• Schloss_Rarefaction_mSphere_2024

  Public
  R

  •

  MIT License

  •0•3•0•0•Updated Feb 14, 2024Feb 14, 2024

• gol

  Public
  What the Package Does (One Line, Title Case)

  0•1•0•0•Updated Feb 12, 2024Feb 12, 2024

• GildedRose

  Public
  Inventory for the Gilded Rose

  R

  •

  Other

  •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

• Schloss_WNWN_mSphere_2023

  Public
  TeX

  •

  MIT License

  •0•1•0•0•Updated Nov 9, 2023Nov 9, 2023

• mikropml

  Public
  User-Friendly R Package for Supervised Machine Learning Pipelines

  r-packagemachine-learningrstats

  R

  •

  Other

  •17•55•11•2•Updated Aug 22, 2023Aug 22, 2023

• schtools

  Public
  Schloss Lab Tools for Reproducible Microbiome Research 💩

  microbiomer-packagemothur+ 1rstats

  R

  •

  Other

  •11•29•7•1•Updated Aug 22, 2023Aug 22, 2023

• ori_mikropml_snakemake_workflow

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Aug 10, 2023Aug 10, 2023

• mikropml-snakemake-workflow

  Public template
  Snakemake template for building reusable and scalable machine learning pipelines with mikropml

  machine-learningsnakemakerstats

  Python

  •

  MIT License

  •3•11•8•1•Updated Jul 25, 2023Jul 25, 2023

• severe-CDI

  Public
  Predicting CDI severity from OTUs

  R

  •

  Other

  •1•2•0•0•Updated Jul 12, 2023Jul 12, 2023

• Armour_OptiFitGLNE_mSphere_2023

  Public
  Application of the OptiFit algorithm to CRC dataset to predict SRNs from microbiome data

  R

  •

  Creative Commons Zero v1.0 Universal

  •0•0•4•1•Updated Jul 5, 2023Jul 5, 2023

• Schloss_Singletons_XXXXX_2023

  Public
  TeX

  •

  MIT License

  •0•3•1•0•Updated Jun 18, 2023Jun 18, 2023

• quarto_code_club

  Public
  Introduction to Using Quarto

  TeX

  •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

• Schloss_CodeClub_MRA_2022

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated Dec 21, 2022Dec 21, 2022

• mothur-snakemake-workflow

  Public template
  Snakemake template for microbial amplicon sequence analysis with mothur.

  snakemakemothur16s-rrna

  Python

  •

  Other

  •0•3•3•0•Updated Dec 8, 2022Dec 8, 2022

• just-enough-python

  Public
  Just enough Python for R users to write advanced Snakemake workflows

  pythontutorialsnakemake+ 3rstatscode-clubquarto

  R

  •

  Other

  •0•1•0•0•Updated Nov 25, 2022Nov 25, 2022

• Barron_IBD-CDI_mBio_2022

  Public archive
  ML analysis to predict C. difficile colonization in fecal communities of IBD & control mice.

  machine-learningreproducible-researchibd+ 1c-difficile

  R

  •

  Other

  •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

• Armour_Resolution_mBio_2021

  Public
  Analysis of optimal taxonomic resolution for predicting SRNs from microbiome data

  R

  •0•2•0•0•Updated Aug 18, 2022Aug 18, 2022

• Lesniak_Severity_mBio_2022

  Public
  TeX

  •

  MIT License

  •1•2•0•0•Updated Jul 15, 2022Jul 15, 2022

• Lesniak_restoreCR_mBio_2022

  Public
  R

  •

  MIT License

  •1•1•0•0•Updated Jul 15, 2022Jul 15, 2022

• logos

  Public
  The lab's hex logos combined in one image

  Other

  •0•0•0•0•Updated Jun 2, 2022Jun 2, 2022

• Sovacool_OptiFit_mSphere_2022

  Public archive
  The manuscript accompanying the OptiFit algorithm in mothur

  snakemakemicrobiomemothur+ 1reproducible-paper

  Python

  •

  Other

  •2•2•0•0•Updated Jun 1, 2022Jun 1, 2022

• snakemake_cluster_tutorial

  Public
  Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.

  Python

  •1•10•1•0•Updated Mar 22, 2022Mar 22, 2022

• Great_Lakes_SLURM

  Public
  Using the Great Lakes cluster and batch computing with SLURM

  hpcslurmbatch-computing

  5•23•2•0•Updated Feb 15, 2022Feb 15, 2022

• Kozich_MiSeqSOP_AEM_2013

  Public
  Reproducible analysis of sequence analysis on a MiSeq

  reproducible-paper

  HTML

  •

  MIT License

  •3•9•0•1•Updated Jan 26, 2022Jan 26, 2022

• vscode-code-club

  Public
  Code club to introduce VS Code

  code-club

  Python

  •0•1•2•0•Updated Nov 3, 2021Nov 3, 2021