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@johannessonlab Johannesson Lab

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    10 repositories

    • johannessonlab.github.io

      Public
      Repo hosting the Johannesson lab web page
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Sep 26, 2024Sep 26, 2024

    • HetVPaper

      Public
      Scripts and pipelines for the Ament et al. (2022) NEE paper on allorecognition genes and reproducive isolation
      R
      •
      MIT License
      •0•0•2•0•Updated Aug 8, 2024Aug 8, 2024

    • Letharia

      Public
      All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
      fungiuppmaxhybridizationploidygenome-annotationlichen
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 23, 2022Dec 23, 2022

    • SpokBlockPaper

      Public
      Scripts and snakemake pipelines associated with the Spok Block paper
      Python
      •
      MIT License
      •0•2•0•0•Updated May 22, 2021May 22, 2021

    • sitophila_spore_killer

      Public
      Scripts used in "An introgressed gene causes meiotic drive in Neurospora sitophila"
      Python
      •0•0•0•0•Updated Dec 22, 2020Dec 22, 2020

    • PodoHetsPaper

      Public
      Scripts and pipelines of Ament et al. (prep) paper on het genes in the Podospora anserina species complex
      Python
      •
      MIT License
      •0•0•2•0•Updated Apr 2, 2020Apr 2, 2020

    • Marasmius_mutation_paper

      Public
      Scripts used for the Marasmius oreades mutation paper by Hiltunen et al (in prep)
      Python
      •
      MIT License
      •2•0•0•0•Updated Dec 17, 2019Dec 17, 2019

    • SpokPaper

      Public
      Scripts and snakemake pipelines associated with the paper of Vogan & Ament-Velasquez et al. "Combinations of Spok genes create multiple meiotic drivers in Podospora"
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 6, 2019Aug 6, 2019

    • InvDeNovo

      Public
      Python scripts for identifying inversions in fragmented de novo genome assemblies
      Python
      •1•3•0•0•Updated Mar 28, 2019Mar 28, 2019

    • intermedia_spore_killer

      Public
      Scripts released with the paper Svedberg et al. "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements".
      Python
      •0•0•0•0•Updated Feb 14, 2019Feb 14, 2019