phipsonlab

All

15 repositories

jazzPanda
Public
A hybrid approach to find spatially relevant marker genes in image based spatial transcriptomics data
r correlation marker-genes linear-models spatial-transcriptomics
R
•
GNU General Public License v3.0
•1•2•0•0•Updated Nov 29, 2024Nov 29, 2024
phipson-lab-website
Public
HTML
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
cellXY
Public
R package to predict sex of single cells and identify Male/Female doublets using machine learning approaches
single-cell-rna-seq machine-learning r
R
•
GNU General Public License v3.0
•5•8•3•0•Updated Nov 11, 2024Nov 11, 2024
jazzPanda_vignette
Public
0•0•0•0•Updated Sep 10, 2024Sep 10, 2024
NextClone-analysis
Public
Analysis for NextClone pipeline
R
•0•0•0•0•Updated Jun 14, 2024Jun 14, 2024
spaceMarker
Public
marker-genes linear-models spatial-transcriptomics xenium r
R
•
GNU General Public License v3.0
•0•3•0•0•Updated May 30, 2024May 30, 2024
SuperCellCyto
Public
SuperCell for Cytometry data
bioinformatics r computational-biology cytometry
R
•
GNU General Public License v3.0
•0•11•0•0•Updated Apr 9, 2024Apr 9, 2024
NextClone
Public
Nextflow pipeline for extracting and counting clonal barcodes
nextflow scrnaseq clonal-evolution nextflow-pipeline
Python
•
MIT License
•3•4•0•0•Updated Feb 20, 2024Feb 20, 2024
SuperCellCyto-analysis
Public
Code to reproduce analysis done for SuperCellCyto paper
R
•0•0•0•0•Updated Jan 31, 2024Jan 31, 2024
CloneDetective
Public
R Package for interrogating clonal data
r-package scrnaseq ngs-analysis clonal-evolution clonal-analysis
R
•
MIT License
•0•0•1•0•Updated Nov 14, 2023Nov 14, 2023
speckle
Public
R package for analysing single cell data
r statistics scrna-seq proportions
R
•
GNU General Public License v3.0
•6•49•3•0•Updated Dec 8, 2022Dec 8, 2022
supercells_for_cytometry
Public archive
Supercells enhances analysis of cytometry data
Python
•
Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Oct 7, 2022Oct 7, 2022
speckle_old
Public
R package for analysing single cell data
R
•
GNU General Public License v3.0
•1•6•0•0•Updated Aug 25, 2022Aug 25, 2022
propeller-paper-analysis
Public
The website hosts the analysis and evaluation of different statistical methods for determining differences in cell type proportions in single cell RNA-seq data.
MIT License
•3•3•0•0•Updated Aug 19, 2022Aug 19, 2022
classify-sex-models
Public
Caret models for classifySex function in speckle package
MIT License
•2•0•0•0•Updated Aug 10, 2022Aug 10, 2022