Repositories list

• nanopore_analysis

  Public
  Repository for scripts related to processing of long-read nanopore data, quality control, genome assembly, and variant calling

  R

  •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

• bulkRNA_processing-AmpliSeq

  Public
  Analysis pipeline for quality control, alignment, and quantification of raw data from targeted AmpliSeq platform

  R

  •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

• ogm_validation

  Public
  Repository for scripts related to OGM/Bionano processing, validation, and interpretation

  R

  •1•0•0•0•Updated Jan 11, 2024Jan 11, 2024

• expression_shinyApp

  Public
  Shiny App and other Utility Scripts for Expression Analysis

  R

  •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

• RNAseq_analysis

  Public
  Analysis of expression data from RNAseq and AmpliSeq technologies

  R

  •0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• wgs_variantCalling

  Public
  SNV and SV calling pipeline for whole genome sequencing data

  R

  •0•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• bulkRNA_processing-RNAseq

  Public
  Analysis pipeline for quality control, alignment, and quantification of raw data from bulk RNAseq experiments

  Shell

  •0•0•0•0•Updated May 27, 2023May 27, 2023