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@theBroeckelLab

theBroeckelLab

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  1. bulkRNA_processing-RNAseq bulkRNA_processing-RNAseq Public

    Analysis pipeline for quality control, alignment, and quantification of raw data from bulk RNAseq experiments

    Shell

  2. bulkRNA_processing-AmpliSeq bulkRNA_processing-AmpliSeq Public

    Analysis pipeline for quality control, alignment, and quantification of raw data from targeted AmpliSeq platform

    R

  3. wgs_variantCalling wgs_variantCalling Public

    SNV and SV calling pipeline for whole genome sequencing data

    R

  4. ogm_validation ogm_validation Public

    Repository for scripts related to OGM/Bionano processing, validation, and interpretation

    R 1

  5. nanopore_analysis nanopore_analysis Public

    Repository for scripts related to processing of long-read nanopore data, quality control, genome assembly, and variant calling

    R

  6. RNAseq_analysis RNAseq_analysis Public

    Analysis of expression data from RNAseq and AmpliSeq technologies

    R

Repositories

Showing 7 of 7 repositories
  • nanopore_analysis Public

    Repository for scripts related to processing of long-read nanopore data, quality control, genome assembly, and variant calling

    theBroeckelLab/nanopore_analysis’s past year of commit activity
    R 0 0 0 0 Updated Jun 24, 2024
  • bulkRNA_processing-AmpliSeq Public

    Analysis pipeline for quality control, alignment, and quantification of raw data from targeted AmpliSeq platform

    theBroeckelLab/bulkRNA_processing-AmpliSeq’s past year of commit activity
    R 0 0 0 0 Updated Feb 15, 2024
  • ogm_validation Public

    Repository for scripts related to OGM/Bionano processing, validation, and interpretation

    theBroeckelLab/ogm_validation’s past year of commit activity
    R 0 1 0 0 Updated Jan 11, 2024
  • expression_shinyApp Public

    Shiny App and other Utility Scripts for Expression Analysis

    theBroeckelLab/expression_shinyApp’s past year of commit activity
    R 0 0 0 0 Updated Oct 23, 2023
  • RNAseq_analysis Public

    Analysis of expression data from RNAseq and AmpliSeq technologies

    theBroeckelLab/RNAseq_analysis’s past year of commit activity
    R 0 0 0 0 Updated Oct 19, 2023
  • wgs_variantCalling Public

    SNV and SV calling pipeline for whole genome sequencing data

    theBroeckelLab/wgs_variantCalling’s past year of commit activity
    R 0 0 0 0 Updated Oct 5, 2023
  • bulkRNA_processing-RNAseq Public

    Analysis pipeline for quality control, alignment, and quantification of raw data from bulk RNAseq experiments

    theBroeckelLab/bulkRNA_processing-RNAseq’s past year of commit activity
    Shell 0 0 0 0 Updated May 27, 2023

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