Add likelihood experiments to main repo #69
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for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
This PR: - fixes many ruff linter errors, removing unused imports and variables - disables ruff formatting and linting for ipynb files I verified that all tests pass on a cloud VM.
<!--pre-commit.ci start--> updates: - [github.com/astral-sh/ruff-pre-commit: v0.5.2 → v0.5.4](astral-sh/ruff-pre-commit@v0.5.2...v0.5.4) <!--pre-commit.ci end--> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Sam Ritchie <sam@mentat.org>
This PR moves all code into a `src` directory, instead of the current flat package structure. This is a prerequisite for the reproducible build that @eightysteele is working on, and is a good change anyway for a project destined to become a library.
This PR ports setup.py to pyproject.toml; this is the modern, recommended way to configure python projects, and gives us a way to add proper settings to things like linting, type-checking etc that match the other projects at probcomp. I've checked that the tests all run to the same failure as on main, the scripts are all installed correctly, the versioning works well etc.
This PR: - Upgrades b3d to https://github.com/probcomp/genjax/releases/tag/v0.5.0 - escapes math backslashes in python strings - these were causing "unsupported literal" exceptions on import GenJAX 0.5.0 doesn't break anything that b3d uses, and includes some nice-to-have type upgrades that will make development a bit more pleasant.
This PR: - turns on the ruff configuration that we're using for genjax - adds it to the pre-commit hooks - auto-fixes most errors (unsorted imports, unused local variables etc) - manually fixes the last few
@sritchie @nishadgothoskar after this change, run_tests.sh passes on my machine.
… likelihood_experiments
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Make likelihood experiments more visible to rest of chi-sight