0.0.2 rev and workflow integration

.Rbuildignore

@@ -0,0 +1 @@
+rds$

.github/workflows/check-standard.yml → .github/workflows/check-standard.yaml

@@ -38,9 +38,16 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::rcmdcheck
+          working-directory: "./scomps"
+          extra-packages: |
+            any::tictoc
+            any::units
+            any::rcmdcheck
+            any::knitr
+            any::rmarkdown
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2
         with:
+          working-directory: "./scomps"
           upload-snapshots: true

.github/workflows/test-coverage.yaml

@@ -24,12 +24,18 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          working-directory: "./scomps"
+          extra-packages: |
+            any::tictoc
+            any::units
+            any::knitr
+            any::rmarkdown
           needs: coverage
 
       - name: Test coverage
         run: |
           covr::codecov(
+            path = "./scomps",
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
@@ -50,6 +56,6 @@ jobs:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package
 
-      - name: Upload coverage to Codecov # Add this step
-        run: |
-          Rscript -e "covr::codecov(token = Sys.getenv('CODECOV_TOKEN'))"
+      # - name: Upload coverage to Codecov # Add this step
+      #   run: |
+      #     Rscript -e "covr::codecov(path = "scomps", token = Sys.getenv('CODECOV_TOKEN'))"

scomps/.Rbuildignore

@@ -1 +1,2 @@
 rds$
+^LICENSE\.md$

scomps/DESCRIPTION

@@ -1,29 +1,35 @@
 Package: scomps
 Title: Scalable R geospatial computation
-Version: 0.0.2.09192023
+Version: 0.0.3.10042023
 Authors@R: 
     person("Insang", "Song", , "geoissong@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-8732-3256"))
 Description: A package for scalable geospatial computation for
     environmental health research
-License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
-    license
+License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3
 Imports: 
+    covr,
     dplyr,
     future,
     future.apply,
+    methods,
     rlang,
     sf,
-    terra
+    stars,
+    terra,
+    testthat,
+    units
 Suggests: 
     future.batchtools,
     igraph,
     knitr,
     logr,
-    rmarkdown
+    rmarkdown,
+    withr
 VignetteBuilder: knitr
+Config/testthat/edition: 3
 LitrVersionUsed: 0.9.0
-LitrId: b4b4b1780f36a343cb1320d63dc814b9
+LitrId: b724f15aefeda747a5a888516d5c7129

scomps/LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2023
+COPYRIGHT HOLDER: I. Song

scomps/LICENSE.md

@@ -0,0 +1,21 @@
+# MIT License
+
+Copyright (c) 2023 I. Song
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

scomps/NAMESPACE

@@ -12,10 +12,9 @@ export(clip_as_extent_ras)
 export(clip_as_extent_ras2)
 export(distribute_process)
 export(estimate_demands)
+export(extent_to_polygon)
 export(extract_with)
 export(extract_with_buffer)
-export(extract_with_buffer.flat)
-export(extract_with_buffer.kernel)
 export(extract_with_polygons)
 export(get_computational_regions)
 export(grid_merge)