TaxonKit v0.2.5

Changelog

• TaxonKit v0.2.5
  
  • add global flag: --line-buffered to disable output buffer. #11
  • replace global flags --names-file and --nodes-file with --data-dir, also support environment variable TAXONKIT_DB. #17
  • taxonkit reformat: detects lineages containing unofficial taxon name and won't show panic message.
  • taxonkit name2taxid: supports synonyms names. #9
  • taxokit lineage: add flag -r/--show-rank to print rank at another new column.

TaxonKit v0.2.5-dev4

Changelog

• taxonkit: replace global flags --names-file and --nodes-file with --data-dir, also support environment variable TAXONKIT_DB. #17
• taxonkit: add global flag: --line-buffered to disable output buffer. #11
• taxonkit reformat: detects lineages containing unofficial taxon name and won't show panic message.
• taxonkit name2taxid: supports synonyms names. #9

TaxonKit v0.2.5-dev3

Changelog

• taxonkit reformat: add detection of panic caused by version change of taxonomy data files and taxon names containing semicolon.
• taxonkit name2taxid: supports synonyms names. #9
• add global flag: --line-buffered to disable output buffer. #11

TaxonKit v0.2.5.-dev

Changelog

• taxonkit name2taxid: support synonyms names. #9
• add global flag: --line-buffered to disable output buffer. #11

TaxonKit v0.2.4

Changelog

• taxonkit reformat:
  • more accurate result when using flag -F/--fill-miss-rank to estimate and fill missing rank with original lineage information
  • supporting escape strings like \t, \n, #5
  • outputting corresponding taxids for reformated lineage. #8
• taxonkit lineage:
  • fix bug for taxid 1 #7
  • add flag -d/--delimiter.

Taxonkit

Changelog

• fix bug brought in v0.2.1

TaxonKit v0.2.2

Changelog

• make verbose information optional #4

TaxonKit v0.2.1

Changelog

• taxonkit list: fix bug of no output for leaf nodes of the taxonomic tree. #4
• add new command genautocomplete to generate shell autocompletion script!

TaxonKit v0.2.0

Changelog

• add command name2taxid to query taxid by taxon scientific name.
• lineage, reformat: changed flags and default operations,
  check the usage.

TaxonKit v0.1.8

Changelog

• taxonkit lineage, add an extra column of lineage in Taxid.
  #3. e.g.,

    349741  cellular organisms;Bacteria;PVC group;Verrucomicrobia;Verrucomicrobiae;Verrucomicrobiales;Akkermansiaceae;Akkermansia;Akkermansia muciniphila;Akkermansia muciniphila ATCC BAA-835  131567;2;1783257;74201;203494;48461;1647988;239934;239935;349741
  

• fix colorful output in windows.