updates style

sib-swiss · Apr 10, 2024 · 1e6c2e1 · 1e6c2e1
1 parent a16a076
commit 1e6c2e1
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Showing 6 changed files with 80 additions and 5 deletions.
diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -6,7 +6,7 @@ on:
     branches: main
     paths: 
       - index.qmd
-      - styles.css
+      - custom.scss
       - renv.lock
       - _quarto.yml
   # every week on sunday

diff --git a/_quarto.yml b/_quarto.yml
@@ -15,10 +15,14 @@ website:
 
 format:
   html:
-    theme: cosmo
-    css: styles.css
+    theme: 
+      - default
+      - custom.scss
     toc: true
-
+    code-link: true
+    header-includes: |
+      <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Source+Sans+Pro">
+      
 execute:
   freeze: auto
 

diff --git a/custom.scss b/custom.scss
@@ -0,0 +1,13 @@
+@import url('https://fonts.cdnfonts.com/css/cabinet-grotesk');
+@import url('https://fonts.googleapis.com/css?family=Inter');
+
+/*-- scss:defaults --*/
+// Base document colors
+$headings-font-family: 'Cabinet grotesk';
+$font-family-sans-serif: 'Inter';
+$code-color: #ae191a;
+$link-color: #009ee3;
+$navbar-bg: #ae191a;
+$kbd-color: #ae191a;
+$kbd-bg: #ae191a;
+$pre-color: #747473;
diff --git a/grid_plot_fig1.pdf b/grid_plot_fig1.pdf
diff --git a/index.qmd b/index.qmd
@@ -15,6 +15,8 @@ library(ggplot2)
 library(dplyr)
 library(ggbreak)
 library(cowplot)
+library(downlit)
+library(xml2)
 ```
 
 Create a file named `.env` and add your GitHub PAT (variable named `PAT` ) and google api key (named `GOOGLE_API_KEY`) in there, e.g.:

diff --git a/renv.lock b/renv.lock
@@ -4,7 +4,7 @@
     "Repositories": [
       {
         "Name": "CRAN",
-        "URL": "https://packagemanager.posit.co/cran/latest"
+        "URL": "https://cran.rstudio.com"
       }
     ]
   },
@@ -116,6 +116,16 @@
       "Repository": "CRAN",
       "Hash": "b7d8d8ee39869c18d8846a184dd8a1af"
     },
+    "brio": {
+      "Package": "brio",
+      "Version": "1.1.4",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "68bd2b066e1fe780bbf62fc8bcc36de3"
+    },
     "bslib": {
       "Package": "bslib",
       "Version": "0.6.1",
@@ -210,6 +220,19 @@
       ],
       "Hash": "411ca2c03b1ce5f548345d2fc2685f7a"
     },
+    "desc": {
+      "Package": "desc",
+      "Version": "1.4.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "R6",
+        "cli",
+        "utils"
+      ],
+      "Hash": "99b79fcbd6c4d1ce087f5c5c758b384f"
+    },
     "digest": {
       "Package": "digest",
       "Version": "0.6.34",
@@ -221,6 +244,26 @@
       ],
       "Hash": "7ede2ee9ea8d3edbf1ca84c1e333ad1a"
     },
+    "downlit": {
+      "Package": "downlit",
+      "Version": "0.4.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "brio",
+        "desc",
+        "digest",
+        "evaluate",
+        "fansi",
+        "memoise",
+        "rlang",
+        "vctrs",
+        "withr",
+        "yaml"
+      ],
+      "Hash": "14fa1f248b60ed67e1f5418391a17b14"
+    },
     "dplyr": {
       "Package": "dplyr",
       "Version": "1.1.4",
@@ -1040,6 +1083,19 @@
       ],
       "Hash": "fd1349170df31f7a10bd98b0189e85af"
     },
+    "xml2": {
+      "Package": "xml2",
+      "Version": "1.3.6",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "cli",
+        "methods",
+        "rlang"
+      ],
+      "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61"
+    },
     "yaml": {
       "Package": "yaml",
       "Version": "2.3.8",