Add disease query

sib-swiss · Nov 22, 2024 · fafc99a · fafc99a
1 parent 54f0e64
commit fafc99a
Showing 1 changed file with 15 additions and 0 deletions.
diff --git a/src/sparql_llm/embed_entities.py b/src/sparql_llm/embed_entities.py
@@ -217,6 +217,21 @@ def generate_embeddings_for_entities():
             up:scientificName ?label .
     }""",
         },
+        ,
+        "uniprot_disease": {
+            "uri": "http://purl.uniprot.org/core/Disease",
+            "label": "Disease",
+            "description": "The preferred names of diseases.",
+            "endpoint": "https://sparql.uniprot.org/sparql/",
+            "pagination": False,
+            "query": """PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
+PREFIX up: <http://purl.uniprot.org/core/>
+SELECT ?uri ?label ?type WHERE {
+  ?uri a up:Disease ;
+  	   skos:prefLabel ?label .
+} """,
+        },
     }
 
     docs: list[Document] = []