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Update doc/command-line.md
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Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
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ctb and bluegenes committed Aug 8, 2022
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Expand Up @@ -791,7 +791,7 @@ superkingdom, phylum, class, order, family, genus, and species.
to ignore case and `-v` to output only taxonomic lineages that do
_not_ match the pattern.

Currently only CSV output is supported; use `sourmash tax prepare` to
Currently only CSV output (optionally gzipped) is supported; use `sourmash tax prepare` to
convert CSV output from `tax grep` into a sqlite3 taxonomy database.

## `sourmash lca` subcommands for in-memory taxonomy integration
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