preparing for & doing release v4.8.0

[ctb]

• update tutorial in MRG: Add taxonomic utilities for LINs and enable tax metagenome #2469 to include version number

[ctb]

Release candidate testing:

• Command line tests pass for a release candidate
• All eight release candidate wheels are built

Releasing to PyPI:

• RC tag(s)s deleted on github
• Release tag cut
• Release notes written
• All eight release wheels built
• Release wheels uploaded to pypi
• tar.gz distribution uploaded to pypi

After release to PyPI and conda-forge/bioconda packages built:

• PyPI page updated
• Zenodo DOI successfully minted upon new github release - see search results
• pip install sourmash installs the correct version
• mamba create -n smash-release -y sourmash installs the correct version

[ctb]

release notes hackmd: https://hackmd.io/Jc6duOwdTR6DSdzKBMLaiw

sourmash v4.8.0 release notes

Major new features:

• Add taxonomic utilities for LINs (MRG: Add taxonomic utilities for LINs and enable tax metagenome #2469, MRG: output bioboxes profile from tax metagenome (for CAMI) #2468, MRG: tax genome with --lins #2519, MRG: modify annotate for flexibility #2518)

Minor new features:

• update prefetch/gather output to be clearer (MRG: update prefetch/gather output to be clearer #2543)

Cleanup and documentation updates:

• update version of screed to >= 1.1,<2 (MRG: update version of screed to >= 1.1,<2 #2415)
• minor fixes to release docs after v4.7.0 (MRG: minor fixes to release docs after v4.7.0 #2498)

Developer updates:

• Remove pkg_resources usage (Remove pkg_resources usage #2505)
• Add LICENSE and test data to sdist (Add LICENSE and test data to sdist #2490)
• Build pyodide wheels in CI (Build pyodide wheels in CI #2433)
• Update nix deps (Update nix deps #2506)
• bump to pyodide 0.23 (bump to pyodide 0.23 #2545)

Dependabot updates:

• Bump serde_json from 1.0.94 to 1.0.95 (Bump serde_json from 1.0.94 to 1.0.95 #2540)
• Bump needletail from 0.5.0 to 0.5.1 (Bump needletail from 0.5.0 to 0.5.1 #2541)
• Bump serde from 1.0.156 to 1.0.158 (Bump serde from 1.0.156 to 1.0.158 #2534)
• Bump thiserror from 1.0.39 to 1.0.40 (Bump thiserror from 1.0.39 to 1.0.40 #2533)
• Bump typed-builder from 0.13.0 to 0.14.0 (Bump typed-builder from 0.13.0 to 0.14.0 #2527)
• Bump serde from 1.0.152 to 1.0.156 (Bump serde from 1.0.152 to 1.0.156 #2530)
• Bump minimum rust version to 1.60 (MRG: bump minimum rust version to 1.60 #2528)
• Bump myst-parser from 0.19.1 to 1.0.0 (Bump myst-parser from 0.19.1 to 1.0.0 #2525)
• Bump chrono from 0.4.23 to 0.4.24 (Bump chrono from 0.4.23 to 0.4.24 #2524)
• Bump pypa/cibuildwheel from 2.12.0 to 2.12.1 (Bump pypa/cibuildwheel from 2.12.0 to 2.12.1 #2523)
• Bump myst-parser from 0.18.1 to 0.19.1 (Bump myst-parser from 0.18.1 to 0.19.1 #2507)
• Bump rayon from 1.6.1 to 1.7.0 (Bump rayon from 1.6.1 to 1.7.0 #2515)
• Bump tempfile from 3.3.0 to 3.4.0 (Bump tempfile from 3.3.0 to 3.4.0 #2514)
• Bump needletail from 0.4.1 to 0.5.0 (Bump needletail from 0.4.1 to 0.5.0 #2512)
• Bump memmap2 from 0.5.9 to 0.5.10 (Bump memmap2 from 0.5.9 to 0.5.10 #2516)
• Bump thiserror from 1.0.38 to 1.0.39 (Bump thiserror from 1.0.38 to 1.0.39 #2509)
• Bump mymindstorm/setup-emsdk from 11 to 12 (Bump mymindstorm/setup-emsdk from 11 to 12 #2508)
• Bump serde_json from 1.0.93 to 1.0.94 (Bump serde_json from 1.0.93 to 1.0.94 #2510)
• Bump typed-builder from 0.12.0 to 0.13.0 (Bump typed-builder from 0.12.0 to 0.13.0 #2511)

[ctb]

conda-forge PR: conda-forge/sourmash-minimal-feedstock#44

bioconda PR: bioconda/bioconda-recipes#39737

[ctb]

released!