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[MRG] minor improvements to Index tests #1900

Merged
merged 52 commits into from
Mar 29, 2022
Merged

[MRG] minor improvements to Index tests #1900

merged 52 commits into from
Mar 29, 2022

Commits on Jan 4, 2022

  1. add -d/--debug to various commands

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Commits on Mar 22, 2022

  1. initial implementation of StandaloneManifestIndex

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    ctb committed Mar 22, 2022
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  2. support prefix if not abspath

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    ctb committed Mar 22, 2022
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Commits on Mar 23, 2022

  1. clean up

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    ctb committed Mar 23, 2022
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  2. some standalone manifests tests - incl CLI

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    ctb committed Mar 23, 2022
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  3. iterate over internal locations instead

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    ctb committed Mar 23, 2022
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  4. switch to picklist API

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  5. aaaaand swap out for load_file_as_index 🎉

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    ctb committed Mar 23, 2022
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  6. remove unnecessary spaces

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    ctb committed Mar 23, 2022
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  7. more tests

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    ctb committed Mar 23, 2022
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  8. more better prefix test

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    ctb committed Mar 23, 2022
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Commits on Mar 24, 2022

  1. remove unnec space

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    ctb committed Mar 24, 2022
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Commits on Mar 25, 2022

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o add/debug
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  2. upgrade output error messages

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  3. Merge branch 'add/debug' into add/manifestindex

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    ctb committed Mar 25, 2022
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  4. fix SBT subdir loading error

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    ctb committed Mar 25, 2022
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  5. add message about using --debug

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    ctb committed Mar 25, 2022
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  6. Merge branch 'add/debug' into add/manifestindex

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  7. Merge branch 'add/test_sbt_load_fail' into add/manifestindex

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  8. doc etc

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  9. rationalize _signatures_with_internal

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    ctb committed Mar 25, 2022
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  10. test describe and fileinfo on manifests

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    ctb committed Mar 25, 2022
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  11. think through more manifest stuff

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  12. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o add/manifestindex
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  13. fix descr

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  14. rationalize _signatures_with_internal

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  15. Merge branch 'refactor/mf_internal' into add/manifestindex

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    ctb committed Mar 25, 2022
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  16. fix docstring

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  17. add heading anchors config; fix napoleon package ref

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    ctb committed Mar 25, 2022
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  18. pin versions for doc building

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    ctb committed Mar 25, 2022
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  19. fix internal refs

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    ctb committed Mar 25, 2022
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  20. fix one last ref target

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  21. add docs

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  22. clarify language

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    ctb committed Mar 25, 2022
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  23. add docs

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    ctb committed Mar 25, 2022
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  24. add more/better tests for lazy loading

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    ctb committed Mar 25, 2022
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  25. clarify

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    ctb committed Mar 25, 2022
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  26. a few more tests

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    ctb committed Mar 25, 2022
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Commits on Mar 26, 2022

  1. Merge branch 'fix/docs' into add/manifestindex

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    ctb committed Mar 26, 2022
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  2. update docs

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    ctb committed Mar 26, 2022
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  3. cleanup and comment on index code

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    ctb committed Mar 26, 2022
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  4. minor improvements to Index tests

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    ctb committed Mar 26, 2022
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  5. add explicit test for lazy-loading prefetch on StandaloneManifestIndex

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    ctb committed Mar 26, 2022
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  6. add explicit test for lazy-loading prefetch on StandaloneManifestIndex

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    ctb committed Mar 26, 2022
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Commits on Mar 27, 2022

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o add/manifestindex
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    ctb committed Mar 27, 2022
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  2. update comments/docstrings

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    ctb committed Mar 27, 2022
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  3. Merge branch 'add/manifestindex' into cleanup/index

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    ctb committed Mar 27, 2022
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  4. Merge branch 'cleanup/index' into cleanup/index_2

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    ctb committed Mar 27, 2022
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Commits on Mar 28, 2022

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o cleanup/index
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  2. Merge branch 'cleanup/index' into cleanup/index_2

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Commits on Mar 29, 2022

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o cleanup/index_2
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  2. Apply suggestions from code review 

    Co-authored-by: Tessa Pierce Ward <bluegenes@users.noreply.github.com>
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