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MRG: provide --internal-storage and --no-internal-storage for index #390

Merged
merged 21 commits into from
Aug 12, 2024
Merged

MRG: provide --internal-storage and --no-internal-storage for index #390

merged 21 commits into from
Aug 12, 2024

Commits on Jul 8, 2024

  1. add some tests for subdir location

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    ctb committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. more changes...

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    ctb committed Jul 9, 2024
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Commits on Jul 12, 2024

  1. Merge branch 'main' of github.com:sourmash-bio/sourmash_plugin_branch… 

    …water into rocksdb_location
    @ctb
    ctb committed Jul 12, 2024
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  2. fix warning

    @ctb
    ctb committed Jul 12, 2024
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  3. reminder to clean up

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    ctb committed Jul 12, 2024
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  4. Merge branch 'fix_warning' of github.com:sourmash-bio/sourmash_plugin… 

    …_branchwater into rocksdb_location
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    ctb committed Jul 12, 2024
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  5. make an actually breaking test

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    ctb committed Jul 12, 2024
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  6. upd

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    ctb committed Jul 12, 2024
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  7. Merge branch 'main' of github.com:sourmash-bio/sourmash_plugin_branch… 

    …water into rocksdb_location
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    ctb committed Jul 12, 2024
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  8. yay a more complete set of breakages

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    ctb committed Jul 12, 2024
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  9. comment

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    ctb committed Jul 12, 2024
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Commits on Jul 13, 2024

  1. force error exit in mastiff multigather for failed gather

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    ctb committed Jul 13, 2024
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  2. Merge branch 'error_exit_multigather' into rocksdb_location

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    ctb committed Jul 13, 2024
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  3. upd sourmash core

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    ctb committed Jul 13, 2024
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  4. finally, sensical error messages :laugh:

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    ctb committed Jul 13, 2024
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Commits on Jul 27, 2024

  1. Use the internalize_storage method from revindex to make a self-conta… 

    …ined rocksdb index
    @luizirber
    luizirber committed Jul 27, 2024
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Commits on Aug 10, 2024

  1. Merge branch 'main' of github.com:sourmash-bio/sourmash_plugin_branch… 

    …water into rocksdb_location
    @ctb
    ctb committed Aug 10, 2024
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  2. make use of internal storage an option, default=True

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    ctb committed Aug 10, 2024
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  3. fix cargo fmt

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    ctb committed Aug 10, 2024
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Commits on Aug 12, 2024

  1. Merge branch 'main' of github.com:sourmash-bio/sourmash_plugin_branch… 

    …water into rocksdb_location
    @ctb
    ctb committed Aug 12, 2024
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  2. remove verbose error

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    ctb committed Aug 12, 2024
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