spacetx · ttung · Mar 28, 2019 · Mar 27, 2019
diff --git a/starfish/test/codebook/__init__.py → starfish/codebook/test/__init__.py b/starfish/test/codebook/__init__.py → starfish/codebook/test/__init__.py
diff --git a/...codebook/test_approximate_nearest_code.py → ...ook/test/test_approximate_nearest_code.py b/...codebook/test_approximate_nearest_code.py → ...ook/test/test_approximate_nearest_code.py
diff --git a/starfish/test/codebook/test_code_length.py → starfish/codebook/test/test_code_length.py b/starfish/test/codebook/test_code_length.py → starfish/codebook/test/test_code_length.py
diff --git a/...ish/test/codebook/test_from_code_array.py → ...ish/codebook/test/test_from_code_array.py b/...ish/test/codebook/test_from_code_array.py → ...ish/codebook/test/test_from_code_array.py
diff --git a/starfish/test/codebook/test_metric_decode.py → starfish/codebook/test/test_metric_decode.py b/starfish/test/codebook/test_metric_decode.py → starfish/codebook/test/test_metric_decode.py
diff --git a/.../spots/util/test_normalize_code_traces.py → ...debook/test/test_normalize_code_traces.py b/.../spots/util/test_normalize_code_traces.py → ...debook/test/test_normalize_code_traces.py
diff --git a/...est/codebook/test_per_round_max_decode.py → ...odebook/test/test_per_round_max_decode.py b/...est/codebook/test_per_round_max_decode.py → ...odebook/test/test_per_round_max_decode.py
diff --git a/...debook/test_synthetic_one_hot_codebook.py → ...k/test/test_synthetic_one_hot_codebook.py b/...debook/test_synthetic_one_hot_codebook.py → ...k/test/test_synthetic_one_hot_codebook.py
diff --git a/starfish/test/expression_matrix/__init__.py → starfish/config/test/__init__.py b/starfish/test/expression_matrix/__init__.py → starfish/config/test/__init__.py
diff --git a/starfish/test/test_config.py → starfish/config/test/test_config.py b/starfish/test/test_config.py → starfish/config/test/test_config.py
diff --git a/starfish/test/image/__init__.py → starfish/experiment/test/__init__.py b/starfish/test/image/__init__.py → starfish/experiment/test/__init__.py
diff --git a/starfish/test/experiment/test_experiment.py → starfish/experiment/test/test_experiment.py b/starfish/test/experiment/test_experiment.py → starfish/experiment/test/test_experiment.py
diff --git a/starfish/test/test_version.py → starfish/experiment/test/test_version.py b/starfish/test/test_version.py → starfish/experiment/test/test_version.py
diff --git a/starfish/test/image/filter/__init__.py → starfish/expression_matrix/test/__init__.py b/starfish/test/image/filter/__init__.py → starfish/expression_matrix/test/__init__.py
diff --git a/...t/expression_matrix/test_serialization.py → ...ression_matrix/test/test_serialization.py b/...t/expression_matrix/test_serialization.py → ...ression_matrix/test/test_serialization.py
diff --git a/starfish/test/intensity_table/__init__.py → starfish/image/_filter/test/__init__.py b/starfish/test/intensity_table/__init__.py → starfish/image/_filter/test/__init__.py
diff --git a/...sh/test/image/filter/test_api_contract.py → ...h/image/_filter/test/test_api_contract.py b/...sh/test/image/filter/test_api_contract.py → ...h/image/_filter/test/test_api_contract.py
diff --git a/starfish/test/pipeline/test_filter.py → starfish/image/_filter/test/test_filter.py b/starfish/test/pipeline/test_filter.py → starfish/image/_filter/test/test_filter.py
diff --git a/...t/image/filter/test_histogram_matching.py → ...e/_filter/test/test_histogram_matching.py b/...t/image/filter/test_histogram_matching.py → ...e/_filter/test/test_histogram_matching.py
diff --git a/...test/image/filter/test_linear_unmixing.py → ...mage/_filter/test/test_linear_unmixing.py b/...test/image/filter/test_linear_unmixing.py → ...mage/_filter/test/test_linear_unmixing.py
diff --git a/starfish/test/pipeline/test_white_tophat.py → ...h/image/_filter/test/test_white_tophat.py b/starfish/test/pipeline/test_white_tophat.py → ...h/image/_filter/test/test_white_tophat.py
diff --git a/.../filter/test_zero_by_channel_magnitude.py → ...er/test/test_zero_by_channel_magnitude.py b/.../filter/test_zero_by_channel_magnitude.py → ...er/test/test_zero_by_channel_magnitude.py
diff --git a/starfish/test/pipeline/__init__.py → starfish/imagestack/test/__init__.py b/starfish/test/pipeline/__init__.py → starfish/imagestack/test/__init__.py
diff --git a/starfish/test/dataset_fixtures.py → starfish/imagestack/test/dataset_fixtures.py b/starfish/test/dataset_fixtures.py → starfish/imagestack/test/dataset_fixtures.py
diff --git a/starfish/test/image/imagestack_test_utils.py → .../imagestack/test/imagestack_test_utils.py b/starfish/test/image/imagestack_test_utils.py → .../imagestack/test/imagestack_test_utils.py
diff --git a/starfish/test/image/test_apply.py → starfish/imagestack/test/test_apply.py b/starfish/test/image/test_apply.py → starfish/imagestack/test/test_apply.py
diff --git a/starfish/test/image/test_imagestack.py → starfish/imagestack/test/test_imagestack.py b/starfish/test/image/test_imagestack.py → starfish/imagestack/test/test_imagestack.py
@@ -11,7 +11,8 @@
 # don't inspect pytest fixtures in pycharm
 # noinspection PyUnresolvedReferences
 from starfish.test import test_utils
-from starfish.test.dataset_fixtures import (  # noqa: F401
+from starfish.types import Axes, PhysicalCoordinateTypes
+from .dataset_fixtures import (  # noqa: F401
     codebook_intensities_image_for_single_synthetic_spot,
     loaded_codebook,
     simple_codebook_array,
@@ -20,7 +21,6 @@
     synthetic_intensity_table,
     synthetic_spot_pass_through_stack,
 )
-from starfish.types import Axes, PhysicalCoordinateTypes
 from .imagestack_test_utils import verify_physical_coordinates
 
 X_COORDS = 1, 2

diff --git a/...test/image/test_imagestack_coordinates.py → ...stack/test/test_imagestack_coordinates.py b/...test/image/test_imagestack_coordinates.py → ...stack/test/test_imagestack_coordinates.py
diff --git a/...est/image/test_imagestack_cropped_load.py → ...tack/test/test_imagestack_cropped_load.py b/...est/image/test_imagestack_cropped_load.py → ...tack/test/test_imagestack_cropped_load.py
diff --git a/starfish/test/image/test_imagestack_index.py → .../imagestack/test/test_imagestack_index.py b/starfish/test/image/test_imagestack_index.py → .../imagestack/test/test_imagestack_index.py
diff --git a/.../image/test_imagestack_labeled_indices.py → ...k/test/test_imagestack_labeled_indices.py b/.../image/test_imagestack_labeled_indices.py → ...k/test/test_imagestack_labeled_indices.py
diff --git a/...sh/test/image/test_imagestack_metadata.py → ...agestack/test/test_imagestack_metadata.py b/...sh/test/image/test_imagestack_metadata.py → ...agestack/test/test_imagestack_metadata.py
diff --git a/...fish/test/image/test_slicedimage_dtype.py → ...imagestack/test/test_slicedimage_dtype.py b/...fish/test/image/test_slicedimage_dtype.py → ...imagestack/test/test_slicedimage_dtype.py
diff --git a/starfish/test/spots/__init__.py → starfish/intensity_table/test/__init__.py b/starfish/test/spots/__init__.py → starfish/intensity_table/test/__init__.py
diff --git a/.../test/intensity_table/test_concatenate.py → .../intensity_table/test/test_concatenate.py b/.../test/intensity_table/test_concatenate.py → .../intensity_table/test/test_concatenate.py
diff --git a/...nsity_table/test_empty_intensity_table.py → ..._table/test/test_empty_intensity_table.py b/...nsity_table/test_empty_intensity_table.py → ..._table/test/test_empty_intensity_table.py
diff --git a/...t/intensity_table/test_from_imagestack.py → ...ensity_table/test/test_from_imagestack.py b/...t/intensity_table/test_from_imagestack.py → ...ensity_table/test/test_from_imagestack.py
diff --git a/...st/intensity_table/test_from_spot_data.py → ...tensity_table/test/test_from_spot_data.py b/...st/intensity_table/test_from_spot_data.py → ...tensity_table/test/test_from_spot_data.py
diff --git a/...sity_table/test_intensity_table_coords.py → ...table/test/test_intensity_table_coords.py b/...sity_table/test_intensity_table_coords.py → ...table/test/test_intensity_table_coords.py
diff --git a/...ble/test_intensity_table_serialization.py → ...est/test_intensity_table_serialization.py b/...ble/test_intensity_table_serialization.py → ...est/test_intensity_table_serialization.py
diff --git a/...t/test_stack_intensity_table_reshaping.py → ...t/test_stack_intensity_table_reshaping.py b/...t/test_stack_intensity_table_reshaping.py → ...t/test_stack_intensity_table_reshaping.py
diff --git a/...nsity_table/test_synthetic_intensities.py → ..._table/test/test_synthetic_intensities.py b/...nsity_table/test_synthetic_intensities.py → ..._table/test/test_synthetic_intensities.py
diff --git a/...ensity_table/test_to_expression_matrix.py → ...y_table/test/test_to_expression_matrix.py b/...ensity_table/test_to_expression_matrix.py → ...y_table/test/test_to_expression_matrix.py
diff --git a/...h/test/intensity_table/test_to_mermaid.py → ...h/intensity_table/test/test_to_mermaid.py b/...h/test/intensity_table/test_to_mermaid.py → ...h/intensity_table/test/test_to_mermaid.py
diff --git a/starfish/test/spots/detector/__init__.py → starfish/multiprocessing/test/__init__.py b/starfish/test/spots/detector/__init__.py → starfish/multiprocessing/test/__init__.py
diff --git a/starfish/test/test_multiprocessing.py → ...tiprocessing/test/test_multiprocessing.py b/starfish/test/test_multiprocessing.py → ...tiprocessing/test/test_multiprocessing.py
diff --git a/.../detector/pixel_spot_detector/__init__.py → starfish/pipeline/test/__init__.py b/.../detector/pixel_spot_detector/__init__.py → starfish/pipeline/test/__init__.py
diff --git a/...mponent/test_pipelinecomponent_by_name.py → ...ne/test/test_pipelinecomponent_by_name.py b/...mponent/test_pipelinecomponent_by_name.py → ...ne/test/test_pipelinecomponent_by_name.py
diff --git a/...tor/combine_adjacent_features/__init__.py → starfish/spots/_detector/test/__init__.py b/...tor/combine_adjacent_features/__init__.py → starfish/spots/_detector/test/__init__.py
diff --git a/...est/spots/detector/test_spot_detection.py → ...ots/_detector/test/test_spot_detection.py b/...est/spots/detector/test_spot_detection.py → ...ots/_detector/test/test_spot_detection.py
diff --git a/starfish/test/test_synthetic_data.py → ...ots/_detector/test/test_synthetic_data.py b/starfish/test/test_synthetic_data.py → ...ots/_detector/test/test_synthetic_data.py
diff --git a/.../test/spots/target_assignment/__init__.py → ...ish/spots/_pixel_decoder/test/__init__.py b/.../test/spots/target_assignment/__init__.py → ...ish/spots/_pixel_decoder/test/__init__.py
diff --git a/...tures/test_calculate_mean_pixel_traces.py → .../test/test_calculate_mean_pixel_traces.py b/...tures/test_calculate_mean_pixel_traces.py → .../test/test_calculate_mean_pixel_traces.py
diff --git a/...t_features/test_create_spot_attributes.py → ...coder/test/test_create_spot_attributes.py b/...t_features/test_create_spot_attributes.py → ...coder/test/test_create_spot_attributes.py
diff --git a/...ures/test_intensities_to_decoded_image.py → ...test/test_intensities_to_decoded_image.py b/...ures/test_intensities_to_decoded_image.py → ...test/test_intensities_to_decoded_image.py
diff --git a/...ine_adjacent_features/test_targets_map.py → ...s/_pixel_decoder/test/test_targets_map.py b/...ine_adjacent_features/test_targets_map.py → ...s/_pixel_decoder/test/test_targets_map.py
diff --git a/starfish/test/spots/util/__init__.py → starfish/spots/test/__init__.py b/starfish/test/spots/util/__init__.py → starfish/spots/test/__init__.py
diff --git a/starfish/test/experiment/builder/test_orderediterator.py b/starfish/test/experiment/builder/test_orderediterator.py
diff --git a/starfish/types/test/__init__.py b/starfish/types/test/__init__.py
diff --git a/starfish/test/test_decoded_spots.py → starfish/types/test/test_decoded_spots.py b/starfish/test/test_decoded_spots.py → starfish/types/test/test_decoded_spots.py