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Clean up watershed (again) #1693
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Codecov Report
@@ Coverage Diff @@
## master #1693 +/- ##
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- Coverage 89.78% 89.78% -0.01%
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Files 241 241
Lines 9076 9071 -5
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- Hits 8149 8144 -5
Misses 927 927
Continue to review full report at Codecov.
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So fresh and so clean!
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- Get rid of the remaining naked numpy arrays and replace them with ImageStacks. - Use ImageStack.reduce rather than instantiating a Reduce Filter and applying it. - Get rid of self.nuclei_thresholded as it is not used. Test plan: ran iss notebook and found 69 cells.
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Depends on #1686
Test plan: ran iss notebook and found 69 cells.