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subset does not work #28

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kad-ecoli opened this issue Mar 28, 2023 · 1 comment
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subset does not work #28

kad-ecoli opened this issue Mar 28, 2023 · 1 comment
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@kad-ecoli
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kad-ecoli commented Mar 28, 2023

The procedure described in https://github.com/steineggerlab/foldcomp#subsetting-databases actually breaks the database.
As an example, try to get the first 10 structures of the H sapiens proteome:

$ grep -ohP "\S+.pdb" h_sapiens.lookup |head > id_list.txt
$ mmseqs createsubdb --subdb-mode 0 --id-mode 1 id_list.txt h_sapiens h_sapiens_subset
$ foldcomp decompress h_sapiens_subset

Decompressing files in h_sapiens_subset using 1 threads
Output directory: h_sapiens_subset_pdb/
foldcomp: malloc.c:2379: sysmalloc: Assertion `(old_top == initial_top (av) && old_size == 0) || ((unsigned long) (old_size) >= MINSIZE && prev_inuse (old_top) && ((unsigned l

This is related to issue #27

@khb7840 khb7840 added the bug Something isn't working label Mar 29, 2023
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khb7840 commented Mar 29, 2023

We've fixed this error in the latest release. Thank you for notifying this.

@khb7840 khb7840 closed this as completed Mar 29, 2023
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