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The procedure described in https://github.com/steineggerlab/foldcomp#subsetting-databases actually breaks the database. As an example, try to get the first 10 structures of the H sapiens proteome:
$ grep -ohP "\S+.pdb" h_sapiens.lookup |head > id_list.txt $ mmseqs createsubdb --subdb-mode 0 --id-mode 1 id_list.txt h_sapiens h_sapiens_subset $ foldcomp decompress h_sapiens_subset Decompressing files in h_sapiens_subset using 1 threads Output directory: h_sapiens_subset_pdb/ foldcomp: malloc.c:2379: sysmalloc: Assertion `(old_top == initial_top (av) && old_size == 0) || ((unsigned long) (old_size) >= MINSIZE && prev_inuse (old_top) && ((unsigned l
This is related to issue #27
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The procedure described in https://github.com/steineggerlab/foldcomp#subsetting-databases actually breaks the database.
As an example, try to get the first 10 structures of the H sapiens proteome:
This is related to issue #27
The text was updated successfully, but these errors were encountered: