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Luke Zappia edited this page Sep 12, 2022
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Welcome to the atlas-feature-selection-benchmark wiki!
This project aims to evaluate the effect of feature selection on the ability to integrate multiple single-cell RNA sequencing (scRNA-seq) samples to construct a reference "atlas", and how that atlas can be used to annotate an unseen query dataset. To achieve this goal we have constructed a robust benchmarking pipeline using Nextflow.
More detail on the project can be found on the other pages of the wiki:
- Setup - What you need to set up for the project
- Pipeline - The structure of the benchmarking pipeline
- Usage - How to use the benchmarking pipeline
- Contributing - How to contribute to the project
- API - Interface between different parts of the benchmarking pipeline