hagen is available as a preprint on bioarXiv and the software package can be found here.
We've organized this repository along the categories below. For each item, you can click the link under nbviewer
to open the notebook in the browser using nbviewer <https://nbviewer.jupyter.org/>_.
There is no 1-1 mapping from figures to notebooks - some notebooks produce panels for several figures, and some figures
contain panels from several notebooks.